Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0342
(724 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g48230.2 68418.m05959 acetyl-CoA C-acyltransferase, putative ... 123 1e-28
At5g48230.1 68418.m05958 acetyl-CoA C-acyltransferase, putative ... 123 1e-28
At5g47720.3 68418.m05894 acetyl-CoA C-acyltransferase, putative ... 120 1e-27
At5g47720.2 68418.m05896 acetyl-CoA C-acyltransferase, putative ... 120 1e-27
At5g47720.1 68418.m05893 acetyl-CoA C-acyltransferase, putative ... 120 1e-27
At5g47720.4 68418.m05895 acetyl-CoA C-acyltransferase, putative ... 115 3e-26
At5g48880.2 68418.m06047 acetyl-CoA C-acyltransferase 1 / 3-keto... 85 6e-17
At5g48880.1 68418.m06046 acetyl-CoA C-acyltransferase 1 / 3-keto... 85 6e-17
At2g33150.1 68415.m04062 acetyl-CoA C-acyltransferase, putative ... 79 3e-15
At1g04710.1 68414.m00468 acetyl-CoA C-acyltransferase, putative ... 78 5e-15
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 31 0.77
At1g63850.1 68414.m07227 PRLI-interacting factor-related similar... 29 4.1
At1g52190.1 68414.m05889 proton-dependent oligopeptide transport... 29 4.1
At5g62530.1 68418.m07848 delta-1-pyrroline-5-carboxylate dehydro... 28 5.5
At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger) fa... 28 5.5
At3g63100.1 68416.m07087 glycine-rich protein 27 9.5
At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein ... 27 9.5
>At5g48230.2 68418.m05959 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 403
Score = 123 bits (297), Expect = 1e-28
Identities = 72/190 (37%), Positives = 105/190 (55%)
Frame = +2
Query: 89 SASVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVI 268
S + + + IVG RTP G F G + AT+L ++A ALK A V PA V +V G V+
Sbjct: 7 SVNPRDVCIVGVARTPMGGFLGSLSSLPATKLGSLAIAAALKRANVDPALVQEVVFGNVL 66
Query: 269 SSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGV 448
S++ G R AAL AGIP +N++C SG ++++ +AQ I G + VAGG+
Sbjct: 67 SANL--GQAPARQAALGAGIPNSVICTTVNKVCASGMKAVMIAAQSIQLGINDVVVAGGM 124
Query: 449 ENMSQAPFAVRNVRFGTALGTNYAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITRDEV 628
E+MS P + R G+ G + + L GL D Y MG AE +F ITR++
Sbjct: 125 ESMSNTPKYLAEARKGSRFGHDSLVDGMLKDGLWDVYNDCGMGSCAELCAEKFQITREQQ 184
Query: 629 DNYALQSQQK 658
D+YA+QS ++
Sbjct: 185 DDYAVQSFER 194
>At5g48230.1 68418.m05958 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 398
Score = 123 bits (296), Expect = 1e-28
Identities = 72/191 (37%), Positives = 104/191 (54%)
Frame = +2
Query: 86 MSASVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQV 265
M+ + IVG RTP G F G + AT+L ++A ALK A V PA V +V G V
Sbjct: 1 MNVDESDVCIVGVARTPMGGFLGSLSSLPATKLGSLAIAAALKRANVDPALVQEVVFGNV 60
Query: 266 ISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGG 445
+S++ G R AAL AGIP +N++C SG ++++ +AQ I G + VAGG
Sbjct: 61 LSANL--GQAPARQAALGAGIPNSVICTTVNKVCASGMKAVMIAAQSIQLGINDVVVAGG 118
Query: 446 VENMSQAPFAVRNVRFGTALGTNYAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITRDE 625
+E+MS P + R G+ G + + L GL D Y MG AE +F ITR++
Sbjct: 119 MESMSNTPKYLAEARKGSRFGHDSLVDGMLKDGLWDVYNDCGMGSCAELCAEKFQITREQ 178
Query: 626 VDNYALQSQQK 658
D+YA+QS ++
Sbjct: 179 QDDYAVQSFER 189
>At5g47720.3 68418.m05894 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 405
Score = 120 bits (288), Expect = 1e-27
Identities = 71/190 (37%), Positives = 105/190 (55%)
Frame = +2
Query: 89 SASVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVI 268
S + + +VG RTP G F G + +AT L +IA ALK A V PA V+ + G V+
Sbjct: 9 SLQPRDVCVVGVARTPIGDFLGSLSSLTATRLGSIAIQAALKRAHVDPALVEEVFFGNVL 68
Query: 269 SSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGV 448
+++ G R AAL AGIP IN++C +G +S++ ++Q I G I VAGG+
Sbjct: 69 TANL--GQAPARQAALGAGIPYSVICTTINKVCAAGMKSVMLASQSIQLGLNDIVVAGGM 126
Query: 449 ENMSQAPFAVRNVRFGTALGTNYAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITRDEV 628
E+MS P + + R G+ LG + + + GL D Y MG+ E Q+ ITR+E
Sbjct: 127 ESMSNVPKYLPDARRGSRLGHDTVVDGMMKDGLWDVYNDFGMGVCGEICADQYRITREEQ 186
Query: 629 DNYALQSQQK 658
D YA+QS ++
Sbjct: 187 DAYAIQSFER 196
>At5g47720.2 68418.m05896 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 415
Score = 120 bits (288), Expect = 1e-27
Identities = 71/190 (37%), Positives = 105/190 (55%)
Frame = +2
Query: 89 SASVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVI 268
S + + +VG RTP G F G + +AT L +IA ALK A V PA V+ + G V+
Sbjct: 9 SLQPRDVCVVGVARTPIGDFLGSLSSLTATRLGSIAIQAALKRAHVDPALVEEVFFGNVL 68
Query: 269 SSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGV 448
+++ G R AAL AGIP IN++C +G +S++ ++Q I G I VAGG+
Sbjct: 69 TANL--GQAPARQAALGAGIPYSVICTTINKVCAAGMKSVMLASQSIQLGLNDIVVAGGM 126
Query: 449 ENMSQAPFAVRNVRFGTALGTNYAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITRDEV 628
E+MS P + + R G+ LG + + + GL D Y MG+ E Q+ ITR+E
Sbjct: 127 ESMSNVPKYLPDARRGSRLGHDTVVDGMMKDGLWDVYNDFGMGVCGEICADQYRITREEQ 186
Query: 629 DNYALQSQQK 658
D YA+QS ++
Sbjct: 187 DAYAIQSFER 196
>At5g47720.1 68418.m05893 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 405
Score = 120 bits (288), Expect = 1e-27
Identities = 71/190 (37%), Positives = 105/190 (55%)
Frame = +2
Query: 89 SASVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVI 268
S + + +VG RTP G F G + +AT L +IA ALK A V PA V+ + G V+
Sbjct: 9 SLQPRDVCVVGVARTPIGDFLGSLSSLTATRLGSIAIQAALKRAHVDPALVEEVFFGNVL 68
Query: 269 SSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGV 448
+++ G R AAL AGIP IN++C +G +S++ ++Q I G I VAGG+
Sbjct: 69 TANL--GQAPARQAALGAGIPYSVICTTINKVCAAGMKSVMLASQSIQLGLNDIVVAGGM 126
Query: 449 ENMSQAPFAVRNVRFGTALGTNYAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITRDEV 628
E+MS P + + R G+ LG + + + GL D Y MG+ E Q+ ITR+E
Sbjct: 127 ESMSNVPKYLPDARRGSRLGHDTVVDGMMKDGLWDVYNDFGMGVCGEICADQYRITREEQ 186
Query: 629 DNYALQSQQK 658
D YA+QS ++
Sbjct: 187 DAYAIQSFER 196
>At5g47720.4 68418.m05895 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 406
Score = 115 bits (277), Expect = 3e-26
Identities = 71/191 (37%), Positives = 105/191 (54%), Gaps = 1/191 (0%)
Frame = +2
Query: 89 SASVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVI 268
S + + +VG RTP G F G + +AT L +IA ALK A V PA V+ + G V+
Sbjct: 9 SLQPRDVCVVGVARTPIGDFLGSLSSLTATRLGSIAIQAALKRAHVDPALVEEVFFGNVL 68
Query: 269 SSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGV 448
+++ G R AAL AGIP IN++C +G +S++ ++Q I G I VAGG+
Sbjct: 69 TANL--GQAPARQAALGAGIPYSVICTTINKVCAAGMKSVMLASQSIQLGLNDIVVAGGM 126
Query: 449 ENMSQAPFAVRNV-RFGTALGTNYAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITRDE 625
E+MS P + + R G+ LG + + + GL D Y MG+ E Q+ ITR+E
Sbjct: 127 ESMSNVPKYLPDASRRGSRLGHDTVVDGMMKDGLWDVYNDFGMGVCGEICADQYRITREE 186
Query: 626 VDNYALQSQQK 658
D YA+QS ++
Sbjct: 187 QDAYAIQSFER 197
>At5g48880.2 68418.m06047 acetyl-CoA C-acyltransferase 1 /
3-ketoacyl-CoA thiolase 1 (PKT1) identical to
3-keto-acyl-CoA-thiolase 1 [Arabidopsis thaliana]
GI:3169568
Length = 457
Score = 84.6 bits (200), Expect = 6e-17
Identities = 62/192 (32%), Positives = 95/192 (49%), Gaps = 1/192 (0%)
Frame = +2
Query: 86 MSASVKGIFIVGAKRTPF-GTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQ 262
M+A I IV A RT G F++T +L ++ + P++V +VVG
Sbjct: 44 MAAFGDDIVIVAAYRTAICKARRGGFKDTLPDDLLASVLKAVVERTSLDPSEVGDIVVGT 103
Query: 263 VISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAG 442
VI+ + R AA AG P PV +NR C SG Q++ + A I G I +
Sbjct: 104 VIAPGSQRAMEC-RVAAYFAGFPDSVPVRTVNRQCSSGLQAVADVAASIRAGYYDIGIGA 162
Query: 443 GVENMSQAPFAVRNVRFGTALGTNYAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITRD 622
GVE+MS ++ G G+N +D + D C LPMG+T+E + +FG+TR+
Sbjct: 163 GVESMS-----TDHIPGGGFHGSNPRAQD--FPKARD--CLLPMGITSENVAERFGVTRE 213
Query: 623 EVDNYALQSQQK 658
E D A++S ++
Sbjct: 214 EQDMAAVESHKR 225
>At5g48880.1 68418.m06046 acetyl-CoA C-acyltransferase 1 /
3-ketoacyl-CoA thiolase 1 (PKT1) identical to
3-keto-acyl-CoA-thiolase 1 [Arabidopsis thaliana]
GI:3169568
Length = 414
Score = 84.6 bits (200), Expect = 6e-17
Identities = 62/192 (32%), Positives = 95/192 (49%), Gaps = 1/192 (0%)
Frame = +2
Query: 86 MSASVKGIFIVGAKRTPF-GTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQ 262
M+A I IV A RT G F++T +L ++ + P++V +VVG
Sbjct: 1 MAAFGDDIVIVAAYRTAICKARRGGFKDTLPDDLLASVLKAVVERTSLDPSEVGDIVVGT 60
Query: 263 VISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAG 442
VI+ + R AA AG P PV +NR C SG Q++ + A I G I +
Sbjct: 61 VIAPGSQRAMEC-RVAAYFAGFPDSVPVRTVNRQCSSGLQAVADVAASIRAGYYDIGIGA 119
Query: 443 GVENMSQAPFAVRNVRFGTALGTNYAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITRD 622
GVE+MS ++ G G+N +D + D C LPMG+T+E + +FG+TR+
Sbjct: 120 GVESMS-----TDHIPGGGFHGSNPRAQD--FPKARD--CLLPMGITSENVAERFGVTRE 170
Query: 623 EVDNYALQSQQK 658
E D A++S ++
Sbjct: 171 EQDMAAVESHKR 182
>At2g33150.1 68415.m04062 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative similar to
3-ketoacyl-CoA thiolase (E.C. 2.3.1.16) from
[Arabidopsis thaliana] GI:2981616, [Cucumis sativus]
GI:393707, [Cucurbita cv. Kurokawa Amakuri] GI:1694621;
contains InterPro accession IPR002155: Thiolase
Length = 462
Score = 79.0 bits (186), Expect = 3e-15
Identities = 56/185 (30%), Positives = 89/185 (48%), Gaps = 1/185 (0%)
Frame = +2
Query: 107 IFIVGAKRTPF-GTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQT 283
+ IV A RTP + G F++T +L +++ ++P++V +VVG V++
Sbjct: 52 VVIVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLNPSEVGDIVVGTVLAPGSQ 111
Query: 284 DGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGVENMSQ 463
R AA AG P+ V +NR C SG Q++ + A I G I + G+E+M+
Sbjct: 112 RASEC-RMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTT 170
Query: 464 APFAVRNVRFGTALGTNYAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITRDEVDNYAL 643
P A N A + A C LPMG+T+E + +FG++R E D A+
Sbjct: 171 NPMAWEG-------SVNPAVKKFAQA----QNCLLPMGVTSENVAQRFGVSRQEQDQAAV 219
Query: 644 QSQQK 658
S +K
Sbjct: 220 DSHRK 224
>At1g04710.1 68414.m00468 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative similar to
3-ketoacyl-CoA thiolase (E.C. 2.3.1.16) from
[Arabidopsis thaliana] GI:2981616, [Cucumis sativus]
GI:393707, [Cucurbita cv. Kurokawa Amakuri] GI:1694621;
contains InterPro accession IPR002155: Thiolase
Length = 443
Score = 78.2 bits (184), Expect = 5e-15
Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 1/185 (0%)
Frame = +2
Query: 107 IFIVGAKRTPF-GTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQT 283
+ IV A+RT G F++T EL +++ V+P++V +VVG V+
Sbjct: 44 VVIVAAQRTALCKAKRGSFKDTFPDELLASVLRALIEKTNVNPSEVGDIVVGTVLGPGSQ 103
Query: 284 DGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGVENMSQ 463
R AA AG P+ P+ +NR C SG Q++ + A I G I + G+E+M+
Sbjct: 104 RASEC-RMAAFYAGFPETVPIRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTT 162
Query: 464 APFAVRNVRFGTALGTNYAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITRDEVDNYAL 643
P + G+ FE C LPMG+T+E + +F ++R+E D A+
Sbjct: 163 NPRGWK----GSVNPNVKKFEQA-------HNCLLPMGITSENVAHRFNVSREEQDQAAV 211
Query: 644 QSQQK 658
S +K
Sbjct: 212 DSHRK 216
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 31.1 bits (67), Expect = 0.77
Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 1/98 (1%)
Frame = +1
Query: 331 SREAGARHQQTVRLWFPVDREQRSGHFDRRSQDLSSGGSREHVASALRGQKREVRHGSGH 510
+ E GAR +RE SG DRR+++ G + RE G G+
Sbjct: 551 NHERGARPNPVKEKERASEREW-SGSSDRRNREDKDAGYERDIP-------REKDVGHGY 602
Query: 511 QLRLRRHPLGRTLGLILRTPHGH-DRREARSPVRNHQR 621
+ RRH R G H H DR +R VR+ +R
Sbjct: 603 DMPERRHRDDRDTGREREREHHHKDRERSREHVRDRER 640
>At1g63850.1 68414.m07227 PRLI-interacting factor-related similar to
PRLI-interacting factor G (GI:11139264) [Arabidopsis
thaliana]; contains Prosite PS00037: Myb DNA-binding
domain repeat signature 1
Length = 548
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -2
Query: 207 APTVAIVCSSVADVLRKTPPKVPNGVLLAPTMKIPLTEADMIQNYTYPVN 58
+PT+ + +S AD + K P ++ NGVL +P+ + A T VN
Sbjct: 56 SPTLFEMMASEADTIGKVPVQIHNGVLPSPSSSSSSSSAAATAARTTNVN 105
>At1g52190.1 68414.m05889 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 607
Score = 28.7 bits (61), Expect = 4.1
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Frame = +2
Query: 425 KISVAGGVENMSQAPFAVRNVRFGTALGTNYA--------FEDTLWAGLSDSYCGLPMGM 580
K++ G + NM + +R+ RFG A GTN F L A LSDSY G + +
Sbjct: 39 KVASYGLLPNMIM--YLIRDYRFGVAKGTNVLFMWSAASNFTPLLGAFLSDSYLGRFLTI 96
Query: 581 TAEKLGAQFGI 613
+ L + G+
Sbjct: 97 SIASLSSFLGM 107
>At5g62530.1 68418.m07848 delta-1-pyrroline-5-carboxylate
dehydrogenase (P5CDH) identical to
delta-1-pyrroline-5-carboxylate dehydrogenase precursor
[Arabidopsis thaliana] gi|15383744|gb|AAK73756;
identical to cDNA delta-1-pyrroline-5-carboxylate
dehydrogenase precursor (P5CDH) nuclear gene for
mitochondrial product GI:15383743; contains Pfam profile
PF00171:aldehyde dehydrogenase (NAD) family protein
Length = 556
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 194 ATVGALKEAGVSPAQVDSMVVGQVISSSQTDGIYTP 301
ATV A + +G PA+V S V G+ I SS + + P
Sbjct: 38 ATVDAEELSGAHPAEVQSFVQGKWIGSSNHNTLLDP 73
>At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 396
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 415 RRSQDLSSGGSREHVASALRGQKREVRHGSGHQ 513
R ++ S+G E+V +A RG++ EVR G+G +
Sbjct: 324 RNVRETSNGNVVENVGNADRGREDEVRSGNGRR 356
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 27.5 bits (58), Expect = 9.5
Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Frame = +1
Query: 442 GSREHVASALRGQKREVRHGSGH--QLRLRRHPLGRTLGLILRTPHGHDRREARSPVRNH 615
G REH G R HG GH + R H GR G H H R R R H
Sbjct: 82 GHREHGHDRGHGHGRGHGHGHGHGHRRHGRDHRHGRDRGHHRGHGHHHHRGHRRGRGRGH 141
>At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 367
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 612 IPNWAPSFSAVMPMGSPQYESESPA 538
IP+ AP FSA +P+G Q S + A
Sbjct: 240 IPSQAPPFSAPLPVGGAQQPSHADA 264
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,650,613
Number of Sequences: 28952
Number of extensions: 332074
Number of successful extensions: 1070
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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