Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0341
         (500 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    32   0.003
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    25   0.38 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   1.5  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   3.6  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            22   3.6  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   3.6  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   3.6  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    21   8.2  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 31.9 bits (69), Expect = 0.003
 Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
 Frame = +3

Query: 165 INVTAVRETDAGLYRCLVLFPNRTPPARNNGTYYRLEVDGGNLIVTPPMNVTVLETERAE 344
           +N+TA+   D GLYRC+    ++   A ++    R+ V G   + +      V       
Sbjct: 476 LNITAIHTNDGGLYRCVA--SSKVGSADHSA---RINVYGLPFVRSMEKQAIVAGGTLIV 530

Query: 345 LECLPKDPQSAVEWYRQGALLNQLPELAARSEVAANGSLVV-RVTTSSDPGEY 500
                  P  +V W R G    QLP +  + +V  NG+L++  V  +SD   Y
Sbjct: 531 HCPFAGHPVDSVVWERDG---RQLP-INRKQKVFINGTLIIENVERASDQATY 579



 Score = 23.0 bits (47), Expect = 1.5
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +3

Query: 165 INVTAVRETDAGLYRCLV 218
           + + +VR+ D G+Y+C +
Sbjct: 375 LRIESVRKEDKGMYQCFI 392


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 25.0 bits (52), Expect = 0.38
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 210 CLVLFPNRTPPARNNGTYYRLEVDGGNL 293
           C V  P RTP     G+++ L  D GN+
Sbjct: 197 CFVKVP-RTPDKPGKGSFWSLHPDSGNM 223


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 12  GHEIPYRLQWDKDGETIFSW 71
           G+ I  ++ WDK+ E +  W
Sbjct: 324 GNPICVQIPWDKNAEALAKW 343


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 228 NRTPPARNNGTYYRLEVDGGNLI-VTPPMNVTVLETERA 341
           N TP A NN T +    +G + +  + P +  + E  R+
Sbjct: 129 NNTPSATNNNTNFNNNSNGASSVGSSSPFDKLIEEDSRS 167


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 8  LRTRNPLSTPVGQGWRDDILVVQ 76
          +R ++PL  P G    DD +VV+
Sbjct: 1  MRVKHPLRMPTGHLDDDDFVVVK 23


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 228 NRTPPARNNGTYYRLEVDGGNLI-VTPPMNVTVLETERA 341
           N TP A NN T +    +G + +  + P +  + E  R+
Sbjct: 77  NNTPSATNNNTNFNNNSNGASSVGSSSPFDKLIEEDSRS 115


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
          ortholog protein.
          Length = 477

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 8  LRTRNPLSTPVGQGWRDDILVVQ 76
          +R ++PL  P G    DD +VV+
Sbjct: 1  MRVKHPLRMPTGHLDDDDFVVVK 23



 Score = 21.8 bits (44), Expect = 3.6
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 228 NRTPPARNNGTYYRLEVDGGNLI-VTPPMNVTVLETERA 341
           N TP A NN T +    +G + +  + P +  + E  R+
Sbjct: 260 NNTPSATNNNTNFNNNSNGASSVGSSSPFDKLIEEDSRS 298


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 78  CCTTRISSLHPCPTGVD 28
           C T+ +SSL+ C  G +
Sbjct: 235 CITSSLSSLYTCIAGYE 251


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,978
Number of Sequences: 336
Number of extensions: 1145
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11839801
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)