Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0341
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces po...    27   1.2  
SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi...    25   6.4  
SPAC1952.12c |csn71|csn7a, csn7|COP9/signalosome complex subunit...    25   8.4  

>SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 414

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 225 PNRTPPARNNGTYYRLEVDGGNLIVTPPMNVTVLETERAE 344
           P RT   +   + YRL+ D  NL +  P+N  V E +  E
Sbjct: 6   PTRTTNLQRIRSLYRLQEDKNNLNIPEPINGKVQEIDTKE 45


>SPAC27D7.06 |||electron transfer flavoprotein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 341

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +3

Query: 345 LECLPKDPQSAVEWYRQGALLNQLPELAARSEVAANG 455
           +E +   P +  EW  +  + N  P+L++   V A G
Sbjct: 196 VEGIDPKPAALQEWVSENIIKNARPDLSSAERVVAGG 232


>SPAC1952.12c |csn71|csn7a, csn7|COP9/signalosome complex subunit
           7a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 357 PKDPQSAVEWYRQGALLNQL 416
           P DP   VE+Y   A++NQ+
Sbjct: 97  PSDPTFTVEYYIMQAMMNQI 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,450,898
Number of Sequences: 5004
Number of extensions: 18769
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)