Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0341
         (500 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1298 - 35542250-35542831,35543218-35543410,35543511-355438...    29   1.6  
12_02_0952 - 24731799-24731901,24732169-24732231,24732941-247339...    28   4.8  
12_02_0503 - 19756561-19757991,19758606-19759967                       27   6.4  
03_01_0521 + 3916876-3916987,3917062-3917438                           27   6.4  
10_01_0097 - 1171949-1172047,1172520-1172591,1172791-1172949,117...    27   8.5  

>02_05_1298 -
           35542250-35542831,35543218-35543410,35543511-35543827,
           35544144-35544186,35545845-35545900,35546028-35546102,
           35546249-35546345,35546422-35546546,35547063-35547167,
           35547295-35547432,35547758-35547831,35547995-35548065,
           35548168-35548363,35548482-35548572,35549264-35549342,
           35549431-35549491,35549745-35549814,35549913-35549987,
           35550119-35550194,35550403-35550489,35550744-35550880,
           35551000-35551063,35551351-35551415
          Length = 958

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
 Frame = +3

Query: 264 YRLEVDGGNLIVTPP---MNVTVLETERAELECLP---KDPQSAVEWYRQGALLNQLPE 422
           +RL ++G  L+       M+ T+L    AE+  +P   KD  S  E+Y    LL  +PE
Sbjct: 163 FRLNLEGNKLVTLSDKMFMSWTMLTEMNAEITLIPPSIKDCSSLAEFYMGNNLLTSIPE 221


>12_02_0952 -
           24731799-24731901,24732169-24732231,24732941-24733980,
           24734094-24734339
          Length = 483

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 246 RNNGTYYRLEVDGGNLIVTPPMNVTVLETERAE 344
           + NG Y+ +EVD  N  +  P  + + E E AE
Sbjct: 350 KGNGLYWMIEVDMRNQALLSPATLYISEEEEAE 382


>12_02_0503 - 19756561-19757991,19758606-19759967
          Length = 930

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = +3

Query: 213 LVLFPNRTPPARNNGTYYR---LEVDGGNLIVTPPMNVTVLETERAELECLPKDPQSAVE 383
           LV   +R PPA +  TY +   LE+D   L+   P+    L  +   LE   K  +  +E
Sbjct: 781 LVTTSSRLPPASDESTYLKLETLEIDDHQLLAISPIRNLCLTKKLIILE-REKMAELPLE 839

Query: 384 WYRQ 395
           W  Q
Sbjct: 840 WLLQ 843


>03_01_0521 + 3916876-3916987,3917062-3917438
          Length = 162

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -2

Query: 307 GGVTIRFPPSTSRR**VPLLRAGGVRLGKRTRQR*RPASVSRTAVTLME 161
           GG  IR P    RR   P   AGGVR  ++ R+   PA+ +  A  L +
Sbjct: 101 GGAQIRVPRPHGRRIRTPA--AGGVRQRRKQRRSATPAAEAEMAARLAD 147


>10_01_0097 -
           1171949-1172047,1172520-1172591,1172791-1172949,
           1172998-1173381,1173478-1175253,1175329-1175452,
           1176859-1177027,1177131-1177226,1177339-1177527,
           1177965-1179303
          Length = 1468

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 333 ERAELECLPKDPQSAVEWYR 392
           E AEL+C+PK  +SA E+ R
Sbjct: 447 EEAELQCVPKSFESAEEYIR 466


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,342,734
Number of Sequences: 37544
Number of extensions: 171444
Number of successful extensions: 544
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)