Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0341
(500 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10900| Best HMM Match : I-set (HMM E-Value=0) 46 2e-05
SB_33342| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 3e-05
SB_31697| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 5e-04
SB_37927| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_10606| Best HMM Match : I-set (HMM E-Value=0) 35 0.033
SB_47305| Best HMM Match : I-set (HMM E-Value=0) 35 0.043
SB_37776| Best HMM Match : fn3 (HMM E-Value=1.4e-22) 35 0.043
SB_8817| Best HMM Match : I-set (HMM E-Value=0) 34 0.057
SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.10
SB_38293| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.10
SB_38167| Best HMM Match : Collagen (HMM E-Value=7e-12) 33 0.10
SB_59380| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.23
SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.23
SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31) 31 0.40
SB_25692| Best HMM Match : I-set (HMM E-Value=2e-20) 31 0.40
SB_45852| Best HMM Match : I-set (HMM E-Value=0) 31 0.53
SB_32327| Best HMM Match : ig (HMM E-Value=7.9e-23) 31 0.53
SB_59628| Best HMM Match : I-set (HMM E-Value=5e-21) 31 0.53
SB_13057| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_8818| Best HMM Match : I-set (HMM E-Value=0) 29 1.6
SB_25337| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_37828| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_40656| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_57926| Best HMM Match : I-set (HMM E-Value=3.5e-39) 29 2.8
SB_29801| Best HMM Match : Collagen (HMM E-Value=3.2e-12) 29 2.8
SB_15085| Best HMM Match : V-set (HMM E-Value=0.0064) 29 2.8
SB_44274| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083) 27 8.7
SB_50666| Best HMM Match : ig (HMM E-Value=2.8e-20) 27 8.7
SB_28204| Best HMM Match : ig (HMM E-Value=5.8e-10) 27 8.7
SB_8553| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_10900| Best HMM Match : I-set (HMM E-Value=0)
Length = 1642
Score = 46.0 bits (104), Expect = 2e-05
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
Frame = +3
Query: 162 SINVTAVRETDAGLYRCLVLFPNRTPPARNNGTYYRLEVDGGNLIVTPPMNVTVLETERA 341
+I + +V +D G Y C + T A Y R+E G P +V E
Sbjct: 264 AIRIQSVIPSDDGSYVCEAINSEGTKRA---DVYLRIE--GFPRFTLSPSDVVAPEFSEV 318
Query: 342 ELECLPK-DPQSAVEWYRQGALLNQLPELAARSEVAANGSLVVRVTTSSDPGEY 500
+L+CL DP +V W + + A+R +V AN +LV+ T S+ GEY
Sbjct: 319 KLDCLVAGDPTPSVSWILPSGAIATVTSPASRVQVLANHTLVIGNATESEYGEY 372
Score = 40.7 bits (91), Expect = 7e-04
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Frame = +3
Query: 162 SINVTAVRETDAGLYRCLVLFPNRTPPARNNGTYYRLEVDGGNLIVTPPMNVTVLETERA 341
++++ ++ T+ G Y C + N + + + R+ V I PP N +V A
Sbjct: 440 TLSLVSLNVTNRGYYTCHL---NNSMGSAELSFFLRVIVPPS--IKVPPTNQSVALGATA 494
Query: 342 ELECLPK-DPQSAVEWYR-QGALLNQLPELAARSEVAANGSLVVRVTTSSDPG 494
L+C DP + W QG+++ Q AR VAANG+L++ + T+ D G
Sbjct: 495 RLDCQADGDPPPLMTWETSQGSVIGQ-----ARHTVAANGTLIITMATAGDTG 542
Score = 36.3 bits (80), Expect = 0.014
Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 1/114 (0%)
Frame = +3
Query: 162 SINVTAVRETDAGLYRCLVLFPNRTPPARNNGTYYRLEVDGGNLIVTPPMNVTVLETERA 341
S+ ++ V++ D G Y C+V N A+ L+ T P N T E
Sbjct: 172 SLVISDVKKADTGYYTCIV--SNSFGSAKAFAQLTVLDAPAAPSFTTTPTNQTAREGSDI 229
Query: 342 ELECLPKD-PQSAVEWYRQGALLNQLPELAARSEVAANGSLVVRVTTSSDPGEY 500
C+ P + W++ G ++ L+ R++ G++ ++ SD G Y
Sbjct: 230 TFYCMASGVPTPTITWHKVGGVI-----LSNRTDKPRPGAIRIQSVIPSDDGSY 278
Score = 32.7 bits (71), Expect = 0.17
Identities = 29/114 (25%), Positives = 44/114 (38%), Gaps = 1/114 (0%)
Frame = +3
Query: 162 SINVTAVRETDAGLYRCLVLFPNRTPPARNNGTYYRLEVDGGNLIVTPPMNVTVLETERA 341
S+ ++ ++ TDAG Y C+ T L V G I P + + A
Sbjct: 80 SLTISGLKFTDAGQYVCVAT----GIATLTTSTAATLTVQGSPDITQGPTGTSPHVGQEA 135
Query: 342 ELECLPK-DPQSAVEWYRQGALLNQLPELAARSEVAANGSLVVRVTTSSDPGEY 500
C+ +P +V W +Q + R V NGSLV+ +D G Y
Sbjct: 136 IFHCIATANPSPSVSWTNP---FDQPINRSGRFTVYGNGSLVISDVKKADTGYY 186
Score = 30.7 bits (66), Expect = 0.71
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Frame = +3
Query: 165 INVTAVRETDAGLYRCLVLFP---NRTPPARNNGTYYRLEVDGGNLIVTPPMNVTVLETE 335
++ +V D G+Y C TP A N Y L PP +V V++ E
Sbjct: 624 LSFASVTRQDRGMYACQACNAAGCTMTPRASLNVLY-------NPLFPVPPPDVGVIQGE 676
Query: 336 RAELECLP-KDPQSAVEWYR 392
A+L C P +P + + W R
Sbjct: 677 DAKLMCAPDSNPPATISWSR 696
>SB_33342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1189
Score = 45.2 bits (102), Expect = 3e-05
Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 8/120 (6%)
Frame = +3
Query: 165 INVTAVRETDAGLYRCLVLFPNRTPPARNNGTYYRLEV--DGGN-----LIVTPPMNVTV 323
I + V+ D G Y+C N ++ Y L V D GN +VTPP V
Sbjct: 247 IQIRNVQLDDGGEYKCTA--ENPVTKRTHSSAYATLTVIPDRGNPRRADFVVTPPSRVVA 304
Query: 324 LETERAELECLPK-DPQSAVEWYRQGALLNQLPELAARSEVAANGSLVVRVTTSSDPGEY 500
++ + LEC K P+ V+WY+ G Q+ +R + +L + SD G Y
Sbjct: 305 IKGKHTVLECAVKGSPKPVVKWYKNG----QIVTYDSRVTIIGESNLEIMQVVPSDAGTY 360
>SB_31697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 518
Score = 41.1 bits (92), Expect = 5e-04
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 321 VLETERAELEC-LPKDPQSAVEWYRQGALLNQLPELAARSEVAANGSLVVRVTTSSDPGE 497
++E A EC + +P+ VEWYR G LL + +L + N L++ +D GE
Sbjct: 38 IIEGSAARFECQITGNPEPEVEWYRNGELLKECKQLTFLYDENDNCKLIITEGKHADAGE 97
Query: 498 Y 500
Y
Sbjct: 98 Y 98
>SB_37927| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1032
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/66 (37%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +3
Query: 306 PMNVTVLETERAELECLPK-DPQSAVEWYRQGALLNQLPELAARSEVAANGSLVVRVTTS 482
P+NVTV ET A EC DP V WYR L V G+L + +
Sbjct: 640 PVNVTVNETSTASFECQASGDPTPTVTWYRGQTALTH-----GGRYVIGQGTLTILRSNP 694
Query: 483 SDPGEY 500
SD GEY
Sbjct: 695 SDTGEY 700
Score = 31.9 bits (69), Expect = 0.31
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 5/118 (4%)
Frame = +3
Query: 162 SINVTAVRETDAGLYRCLVLFPN-RTPPARNNGTYYRL--EVDGGNLIVTPPMNVTVLET 332
SI+V + AG YRC+ + P P ++ Y ++ +D + V P + T+ E
Sbjct: 194 SISVRNITLKSAGFYRCVAVNPMLPNLPKKSQPAYLQVLPAIDAPHFQV-HPSSTTIAEL 252
Query: 333 ERAELEC-LPKDPQSAVEW-YRQGALLNQLPELAARSEVAANGSLVVRVTTSSDPGEY 500
+ A L+C + P +V W + LL+ P+ R ++ +NGSL + + G Y
Sbjct: 253 QSAALQCHILGVPTPSVTWEFNSNGLLDS-PD---RYQL-SNGSLYFKSANRTMAGVY 305
>SB_10606| Best HMM Match : I-set (HMM E-Value=0)
Length = 872
Score = 35.1 bits (77), Expect = 0.033
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +3
Query: 279 DGGNLIVTPPMNVTVLETERAELECLPKD-PQSAVEWYRQGALLNQLPELAARSEVAANG 455
DG L T N+T L + L C P +V W + G +L P R + NG
Sbjct: 781 DGSPLTATVGDNITALTNTQVTLRCQATGTPMPSVIWSKDGQVLVSGP----RHVINKNG 836
Query: 456 SLVVRVTTSSDPGEY 500
S+V++ + D G Y
Sbjct: 837 SIVIQKASPVDRGRY 851
Score = 31.5 bits (68), Expect = 0.40
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +3
Query: 312 NVTVLETERAELEC-LPKDPQSAVEWYRQGALLNQLPELAARSEVAANGSLVVRVTTSSD 488
N+T L L C + P + W R G ++P V NGSL++ +SSD
Sbjct: 681 NITALTDTLVTLHCPVTGVPAPTITWSRNG---QEMPANGDGYLVTNNGSLILEKVSSSD 737
Query: 489 PGEY 500
G Y
Sbjct: 738 IGRY 741
Score = 30.3 bits (65), Expect = 0.93
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +3
Query: 309 MNVTVLETERAELEC-LPKDPQSAVEWYRQGALLNQLPELAARSEVAANGSLVVRVTTSS 485
M + L + L+C + P+ V+W + G + R V GSLV+ + SS
Sbjct: 238 MTIRTLTSTSITLKCPVTGSPKPLVDWSKTGQPIIS----GDRVSVTVTGSLVIVNSRSS 293
Query: 486 DPGEY 500
D GEY
Sbjct: 294 DSGEY 298
>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
Length = 5832
Score = 34.7 bits (76), Expect = 0.043
Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 1/104 (0%)
Frame = +3
Query: 192 DAGLYRCLVLFPNRTPPARNNGTYYRLEVDGGNLIVTPPMNVTVLETERAELECLPKD-P 368
DAGLYRC +L T + + + R + ++ +E LE + P
Sbjct: 4819 DAGLYRCTILNDLGTASSMADLSVNRALTKPE--VAEKMTDIDAVEGTEVRLEVIKFGCP 4876
Query: 369 QSAVEWYRQGALLNQLPELAARSEVAANGSLVVRVTTSSDPGEY 500
VEW+R L SE +LV+R T++D G Y
Sbjct: 4877 MPKVEWFRDNVQLTNNDRYTI-SETEDTSTLVIRNCTTNDTGPY 4919
>SB_37776| Best HMM Match : fn3 (HMM E-Value=1.4e-22)
Length = 1296
Score = 34.7 bits (76), Expect = 0.043
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Frame = +3
Query: 189 TDAGLYRCLVLFPNRTPPARNN--GTYYRLEVDGGNLIVTPPMNVTVLETERAELECLPK 362
+D+G+YRC ++T N G+ L+V I+ VTV E A L C+ +
Sbjct: 3 SDSGVYRCTAKTFDQTGSGIVNYPGSDIFLDVQFPPSIIVISSVVTVGENTDARLPCVSE 62
Query: 363 -DPQSAV-EWYRQGALLNQLPELAARSEVAANGSLVVRVTTSSDPGEY 500
+P + V +W R G L P+ + V GSL++R SD G Y
Sbjct: 63 GNPATEVTKWTRVGGELGP-PD---KFVVLERGSLLIRKVKRSDMGTY 106
>SB_8817| Best HMM Match : I-set (HMM E-Value=0)
Length = 2526
Score = 34.3 bits (75), Expect = 0.057
Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 3/115 (2%)
Frame = +3
Query: 165 INVTAVRETDAGLYRCLVLFPNRTPPARNNGTYYRLEVDGGNLIVTPPMNVTVLETERAE 344
+ +T+ +DAG Y+C+ + T + T + P + V ET+
Sbjct: 1121 LTITSASPSDAGTYKCVTKNDSGTFTQMFDITIVEKPEGAAPEFIKPLKVLEVFETQPVR 1180
Query: 345 LEC-LPKDPQSAVEWYRQGALLNQLPELAARSEVAANGSLVVRVTTS--SDPGEY 500
LEC + P+ + W + G ++ + + + V + V+ +T S D GEY
Sbjct: 1181 LECSVTGTPEPQITWLKGGDVVKEDDRI---TTVFDGETCVLNITVSCLDDEGEY 1232
Score = 29.5 bits (63), Expect = 1.6
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Frame = +3
Query: 291 LIVTPPMNVTVLETERAELECLPK-DPQSAVEWYRQGALLNQLPELAARSEVAANG---- 455
+I+ P ++ + E A + + PQ VEW++ G L L +V
Sbjct: 968 VIIQPLKSLEIKEENAARFDVRVRGSPQPLVEWFKDGRQLQDLGRFMIIDDVDDQDKELY 1027
Query: 456 SLVVRVTTSSDPGEY 500
SLV+ D GEY
Sbjct: 1028 SLVIEDVIPEDAGEY 1042
>SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4232
Score = 33.5 bits (73), Expect = 0.10
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
Frame = +3
Query: 162 SINVTAVRETDAGLYRCLVLFPNRTPPARNNGTYYRLEVDGGNLIVTPPMNVTVLETERA 341
S+ +T + TD Y C + L V+ I+TPP NVT+ E
Sbjct: 1679 SLTITNLVRTDEARYSCKAI----NAAGEKTSEQGLLTVNYPPKILTPPKNVTITEGNDV 1734
Query: 342 ELEC-LPKDPQSAVEWYRQGALLNQLPELAARSEVAANG 455
L C + P+ V+W G+ +L + ++ +A G
Sbjct: 1735 TLSCEVEGKPEVTVDWL-NGSTPIELSSVIEKTGLAVTG 1772
Score = 30.7 bits (66), Expect = 0.71
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
Frame = +3
Query: 171 VTAVRETDAGLYRCLVLFPNRTPPARNNGTYYRLEVDGGNLIVTPPMNVTVLETERAELE 350
+T V TD+G YRC N + T L+V I T P TV E + L
Sbjct: 920 ITNVNRTDSGAYRC-----NASSILGVITTKASLDVYFKPDISTHPSPQTVTEGQNVTLL 974
Query: 351 CLPKD-PQSAVEWYRQGALLNQLPELAARSEVAANGSLVVRVTTSSDPGEY 500
C+ + P + +W++ + + E R+ + + G+L+ + D G+Y
Sbjct: 975 CVAEGRPTPSYQWFKDDSPFD--AENNTRASL-SEGNLIFTKISRDDHGQY 1022
>SB_38293| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1732
Score = 33.5 bits (73), Expect = 0.10
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 297 VTPPMNVTVLETERAELEC-LPKDPQSAVEWYRQG 398
VTP NVTV +T++AEL C +P V W R G
Sbjct: 149 VTPGANVTVNKTDKAELSCSATGNPTPNVTWTRSG 183
>SB_38167| Best HMM Match : Collagen (HMM E-Value=7e-12)
Length = 299
Score = 33.5 bits (73), Expect = 0.10
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +3
Query: 306 PMNVTVLETERAELEC--LPKDPQSAVEWYRQGALLNQLPELAARSEVAANGSLVVRVTT 479
P + V + A+L C + DP + V W R G LP +R + G LV+R
Sbjct: 212 PRELNVNASASAQLNCSIISGDPNAVVSWKRIGG---DLPGNRSRDD--GRGGLVIRDVR 266
Query: 480 SSDPGEY 500
SSD G Y
Sbjct: 267 SSDAGMY 273
>SB_59380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1226
Score = 32.3 bits (70), Expect = 0.23
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 6/119 (5%)
Frame = +3
Query: 162 SINVTAVRETDAGLYRCLVLFPNRTPPARNNG---TYYRLEVDGGNLIVTPPMNVTVLET 332
++ + V++ D G Y+C+ N R+N T + + T P N +V+
Sbjct: 239 ALQIHNVQQVDQGTYQCVA--SNIARIRRSNTATLTVQQAKSSKQPNFTTIPSNTSVISG 296
Query: 333 ERAELECLPKD-PQSAVEWYRQGALLNQLPELAARSEVAANGSLVVRVTTSS--DPGEY 500
E A LEC+ P V+W + G + A +A G +R+ ++S D GEY
Sbjct: 297 EEAVLECIATGVPVPTVQWKKVGG-----ADRAYDYSLAKPGGCNLRIRSASPKDGGEY 350
>SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6119
Score = 32.3 bits (70), Expect = 0.23
Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 1/114 (0%)
Frame = +3
Query: 162 SINVTAVRETDAGLYRCLVLFPNRTPPARNNGTYYRLEVDGGNLIVTPPMNVTVLETERA 341
++ + V+ D G+YRC N + A ++ LE + I+ +V ERA
Sbjct: 2607 TLTIRDVKLGDEGIYRCNA--KNSSGSAHSSAELTVLEREARPRILEKLQDVDSSVGERA 2664
Query: 342 ELEC-LPKDPQSAVEWYRQGALLNQLPELAARSEVAANGSLVVRVTTSSDPGEY 500
+ + P V+WYR+ + R E SL + D G Y
Sbjct: 2665 MFKIRVSGSPMPVVQWYRRDEEITTKGHYIVRDEGRGYFSLTIEYIDYEDEGAY 2718
Score = 28.7 bits (61), Expect = 2.8
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 1/114 (0%)
Frame = +3
Query: 162 SINVTAVRETDAGLYRCLVLFPNRTPPARNNGTYYRLEVDGGNLIVTPPMNVTVLETERA 341
S+ + + ETDAG Y+C+ N A + E G + TV+E E
Sbjct: 452 SLIIQDLEETDAGRYKCVA--TNEAGEAESMAQLTVNEELIGPRFEKMKESFTVVEGESV 509
Query: 342 ELEC-LPKDPQSAVEWYRQGALLNQLPELAARSEVAANGSLVVRVTTSSDPGEY 500
EL + P +EW + G + + + + E L + ++ D G Y
Sbjct: 510 ELVARVTGKPAPEIEWTKDGKTVRKTNNVDTK-ERDDQAVLTIEESSRDDSGLY 562
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +3
Query: 312 NVTVLETERAELECLPK-DPQSAVEWYRQGALLNQLPELAARSEVAANGSLVVRVTTSSD 488
N+ V+E + A+ K +P+ VEW++ G + ++++ +L + D
Sbjct: 3244 NIKVVEGDEAQFSVRVKGEPEPKVEWFKTGKKIKSHARFSSKAGEKHTYTLTISDVAMED 3303
Query: 489 PGEY 500
G Y
Sbjct: 3304 FGTY 3307
>SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)
Length = 1399
Score = 31.5 bits (68), Expect = 0.40
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +3
Query: 306 PMNVTVLETERAELECLPK-DPQSAVEWYRQGALLNQLPELAARSEVAANGSLVVRVTTS 482
P ++ V + L+C DP+ + WYR+G+ P+ +V +GSL +R T
Sbjct: 643 PKDLEVPQGGSPTLQCKGVGDPRPTITWYRKGS--KTFPK---HFKVRPSGSLYIREITK 697
Query: 483 SDPGEY 500
D G Y
Sbjct: 698 EDQGTY 703
>SB_25692| Best HMM Match : I-set (HMM E-Value=2e-20)
Length = 104
Score = 31.5 bits (68), Expect = 0.40
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +3
Query: 312 NVTVLETERAELEC-LPKDPQSAVEWYRQGALLNQLPELAARSEVAANGSLVVRVTTSSD 488
N+T L L C + P + W R G ++P V NGSL++ +SSD
Sbjct: 23 NITALTDTLVTLHCPVTGVPAPTITWSRNG---QEMPANGDGYLVTNNGSLILEKVSSSD 79
Query: 489 PGEY 500
G Y
Sbjct: 80 IGRY 83
>SB_45852| Best HMM Match : I-set (HMM E-Value=0)
Length = 1122
Score = 31.1 bits (67), Expect = 0.53
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 312 NVTVLETERAELECLP-KDPQSAVEWYRQGALLNQLPELAARSEVAANGSLVVRVTTSSD 488
N+T+LE + EL+C P+ AV W+ G+ + + L G+L + T+ +
Sbjct: 362 NITILEGKDLELQCPSIGTPKPAVTWFINGSAVTESDTLKVDPN---TGALSIIEITAEE 418
Query: 489 PGEY 500
G+Y
Sbjct: 419 QGQY 422
>SB_32327| Best HMM Match : ig (HMM E-Value=7.9e-23)
Length = 932
Score = 31.1 bits (67), Expect = 0.53
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 297 VTPPMNVTVLETERAELEC-LPKDPQSAVEWYRQGALLNQLPELAARSEVAANG 455
+TP N+T +T+ +L C + +P A+ W + G + N L +R +V G
Sbjct: 464 ITPTGNITANQTDVVKLACHVNANPTPAIAWIKDGDVTNVLAN-QSRLDVVVEG 516
>SB_59628| Best HMM Match : I-set (HMM E-Value=5e-21)
Length = 209
Score = 31.1 bits (67), Expect = 0.53
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 312 NVTVLETERAELECLP-KDPQSAVEWYRQGALLNQLPELAARSEVAANGSLVVRVTTSSD 488
N+T+LE + EL+C P+ AV W+ G+ + + L G+L + T+ +
Sbjct: 128 NITILEGKDLELQCPSIGTPKPAVTWFINGSAVTESDTLKVDPN---TGALSIIEITAEE 184
Query: 489 PGEY 500
G+Y
Sbjct: 185 QGQY 188
>SB_13057| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 892
Score = 30.7 bits (66), Expect = 0.71
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 432 RSEVAANGSLVVRVTTSSDPGEY 500
R+ V +NGSLV+R T SD G Y
Sbjct: 86 RASVKSNGSLVIRSTVGSDEGTY 108
>SB_8818| Best HMM Match : I-set (HMM E-Value=0)
Length = 2787
Score = 29.5 bits (63), Expect = 1.6
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 5/118 (4%)
Frame = +3
Query: 162 SINVTAVRETDAGLYRCLV--LFPNRTPPA--RNNGTYYRLEVDGGNLIVTPPMNVTVLE 329
S+ +T +R DAG Y+C++ L T A R + DG +L +VT E
Sbjct: 2376 SLIITNLRPEDAGTYKCVITNLLGVETSEAVIRVQEREHAPRFDGTDL----GQSVTAQE 2431
Query: 330 -TERAELECLPKDPQSAVEWYRQGALLNQLPELAARSEVAANGSLVVRVTTSSDPGEY 500
E + + P+ V W + G +++ ++ R + SLV+ T D G Y
Sbjct: 2432 GFELNKTFIIRGKPRPTVTWMKDGNVISSSNGVSLRQR-GESYSLVIIKVTKEDSGNY 2488
>SB_25337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1879
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 294 IVTPPMNVTVLETERAELECLPKDPQSAVEWYRQGALLNQLPEL 425
+VTP + +V++ ER +L+ P+DP V W R + + +P L
Sbjct: 1734 MVTPSTSYSVVKPERVKLQSPPQDPMVPV-WARFVSASHAVPPL 1776
>SB_37828| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 29.1 bits (62), Expect = 2.2
Identities = 31/114 (27%), Positives = 44/114 (38%), Gaps = 1/114 (0%)
Frame = +3
Query: 162 SINVTAVRETDAGLYRCLVLFPNRTPPARNNGTYYRLEVDGGNLIVTPPMNVTVLETERA 341
+I V++V DAG YRC + A + G L G + +T +E
Sbjct: 234 AILVSSVTGQDAGRYRCKTM-------ATSTGDTAGLFKLGTPMNCVFKDRITAVEGTSV 286
Query: 342 ELEC-LPKDPQSAVEWYRQGALLNQLPELAARSEVAANGSLVVRVTTSSDPGEY 500
LEC ++W R L LP A + SLV+ +SD G Y
Sbjct: 287 SLECHFATSTNPEIDWER---LNGVLPSERATLSREPHSSLVIARVEASDAGRY 337
>SB_40656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 492
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 384 WYRQGALLNQLPELAARSEVAANGSLVVRVTTSSDPGEY 500
W + G +N + R V+ +GSL ++ TSSD GEY
Sbjct: 34 WTKNGQPINLADD---RYTVSPSGSLSIKGVTSSDSGEY 69
>SB_57926| Best HMM Match : I-set (HMM E-Value=3.5e-39)
Length = 788
Score = 28.7 bits (61), Expect = 2.8
Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 2/115 (1%)
Frame = +3
Query: 162 SINVTAVRETDAGLYRCLVLFPNRTPPARNNGTYYRLEVDGGNLIVTPPMNVTVLETERA 341
++ +T + D G+Y CL + +N ++ PP + +
Sbjct: 381 ALQITGTQRVDNGVYTCLA---RNSLGVKNASAELKVLAQTNITTPLPPRTIAIKGYSIT 437
Query: 342 ELECLPKDPQSAVE--WYRQGALLNQLPELAARSEVAANGSLVVRVTTSSDPGEY 500
+ KD ++ W + G+ + R ++ ANGSL + SD G Y
Sbjct: 438 LAVGVNKDSLISLRFTWTKDGSSVTD-----PRMQILANGSLAITAVHDSDAGTY 487
Score = 28.7 bits (61), Expect = 2.8
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +3
Query: 162 SINVTAVRETDAGLYRCLV 218
S+ +TAV ++DAG Y+C+V
Sbjct: 473 SLAITAVHDSDAGTYKCVV 491
>SB_29801| Best HMM Match : Collagen (HMM E-Value=3.2e-12)
Length = 182
Score = 28.7 bits (61), Expect = 2.8
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +3
Query: 294 IVTPPMNVTVLETERAELEC-LPKDPQSAVEWYRQGALLNQLPELAARSEVAANGSLVVR 470
++ P + + + L C + +P + V W + G LP +R + G LV+R
Sbjct: 97 VIIAPQKLNIDSSATVVLNCSVSGNPSAPVTWSKIGG---SLPRNRSRDD--GRGGLVIR 151
Query: 471 VTTSSDPGEY 500
SSD G Y
Sbjct: 152 DARSSDAGLY 161
>SB_15085| Best HMM Match : V-set (HMM E-Value=0.0064)
Length = 224
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 432 RSEVAANGSLVVRVTTSSDPGEY 500
R+EV NGSLV++ SD G Y
Sbjct: 84 RAEVMVNGSLVIKEAIKSDQGTY 106
>SB_44274| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 924
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 279 DGGNLIVTPPMNVTVLETERAELECLPKDPQSAVEWYRQ 395
+ N V P +N L E LE +PK + ++W +Q
Sbjct: 297 ESSNTAVDPQVNYEDLGAEHVLLESMPKHKELWMQWLKQ 335
>SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1411
Score = 27.5 bits (58), Expect = 6.6
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = +3
Query: 273 EVDGGNLIVTPPMNVTVLETERAELECLPKDPQSAVEWYRQG 398
+ +GG +VT P + ++ + +L DP S+ W G
Sbjct: 277 QFEGGEELVTKPRSGNLMTSSTEQLPASSADPMSSESWSSSG 318
>SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)
Length = 1266
Score = 27.1 bits (57), Expect = 8.7
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -3
Query: 81 PCCTTRISSLHPCPTGVD 28
PC T S+LHP PT D
Sbjct: 906 PCAPTPASTLHPSPTDTD 923
>SB_50666| Best HMM Match : ig (HMM E-Value=2.8e-20)
Length = 293
Score = 27.1 bits (57), Expect = 8.7
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +3
Query: 291 LIVTPPMNVTVLETERAELECLPKD---PQSAVEWYRQG 398
L+V NVTV ETE L C + P +V W R G
Sbjct: 3 LVVRSNGNVTVNETESTVLSCSVSEGVAPPPSVTWSRDG 41
>SB_28204| Best HMM Match : ig (HMM E-Value=5.8e-10)
Length = 189
Score = 27.1 bits (57), Expect = 8.7
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +3
Query: 291 LIVTPPMNVTVLETERAELECLPKD---PQSAVEWYRQG 398
L+V NVTV ETE L C + P +V W R G
Sbjct: 3 LVVRSNGNVTVNETESTVLSCSVSEGVAPPPSVTWSRDG 41
>SB_8553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 982
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +3
Query: 294 IVTPPMNVTVLETERAELEC-LPKDPQSAVEWYR 392
++ P NVTVL E A LEC D +W R
Sbjct: 248 VLQPIANVTVLSGENATLECKAMSDSMPHFQWIR 281
>SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = +3
Query: 303 PPMNVTVLETERAELECLPKDPQSAVEWYRQGALLNQLPELAARSEVAANG 455
PP+ ++ L E LPKDP W +++ + E++ R G
Sbjct: 101 PPLWMSTLTGETRRDYMLPKDPWGIERWMGPWGMVSSIGEVSRRKNREGEG 151
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,097,572
Number of Sequences: 59808
Number of extensions: 171020
Number of successful extensions: 551
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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