Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0341
         (500 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.25 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.25 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.59 
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   2.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   4.1  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.8 bits (54), Expect = 0.25
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
 Frame = +3

Query: 201 LYRCLVLFPNRTPPARNNGTYYRLEVDGGNLIVTPPMNVTVLETERAELECLPK-DPQSA 377
           L  CL+            G  +   + G + ++ PP  V    +  A L+C     P   
Sbjct: 2   LASCLIFVGAAAAVTSAGGHGFDAHLRGPSFVMEPPSRVEFSNSSGAWLDCTATGSPPLN 61

Query: 378 VEW-YRQGALLNQLPELAARSEVAANGSLVV 467
           ++W    G  +N +P +     V  NG+LV+
Sbjct: 62  IDWSTADGHPVNDVPGV---RRVLRNGTLVL 89



 Score = 20.6 bits (41), Expect = 9.5
 Identities = 5/18 (27%), Positives = 11/18 (61%)
 Frame = +3

Query: 165 INVTAVRETDAGLYRCLV 218
           + +  +   D G+Y+C+V
Sbjct: 384 LRLNGINREDRGMYQCIV 401


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.8 bits (54), Expect = 0.25
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
 Frame = +3

Query: 201 LYRCLVLFPNRTPPARNNGTYYRLEVDGGNLIVTPPMNVTVLETERAELECLPK-DPQSA 377
           L  CL+            G  +   + G + ++ PP  V    +  A L+C     P   
Sbjct: 2   LASCLIFVGAAAAVTSAGGHGFDAHLRGPSFVMEPPSRVEFSNSSGAWLDCTATGSPPLN 61

Query: 378 VEW-YRQGALLNQLPELAARSEVAANGSLVV 467
           ++W    G  +N +P +     V  NG+LV+
Sbjct: 62  IDWSTADGHPVNDVPGV---RRVLRNGTLVL 89



 Score = 20.6 bits (41), Expect = 9.5
 Identities = 5/18 (27%), Positives = 11/18 (61%)
 Frame = +3

Query: 165 INVTAVRETDAGLYRCLV 218
           + +  +   D G+Y+C+V
Sbjct: 384 LRLNGINREDRGMYQCIV 401


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 0.59
 Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 7/114 (6%)
 Frame = +3

Query: 165 INVTAVRETDAGLYRCLVLFPNRTPPARNNGTYYRLEVDGGNLIVTPPMNVTVLETERAE 344
           + + +V++ D G+Y+C V     +  A        L++ GG     PP        E  +
Sbjct: 355 LRIESVKKEDKGMYQCFVRNDQESAQATAE-----LKL-GGRF--EPPQIRQAFAEETLQ 406

Query: 345 ------LECLPK-DPQSAVEWYRQGALLNQLPELAARSEVAANGSLVVRVTTSS 485
                 L+C+   +P   + W   G  L+    L     V  NG +V  +  SS
Sbjct: 407 PGPSMFLKCVASGNPTPEITWELDGKRLSNTERLQVGQYVTVNGDVVSHLNISS 460



 Score = 24.6 bits (51), Expect = 0.59
 Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 2/114 (1%)
 Frame = +3

Query: 165 INVTAVRETDAGLYRCLVLFPNRTPPARNNGTYYRLEVDGGNLIVTPPMNVTVLETERAE 344
           +N+++    D GLY+C+    ++   A ++    RL V G   I        ++  E   
Sbjct: 456 LNISSTHTNDGGLYKCIA--ASKVGSAEHSA---RLNVYGLPFIRHMDKK-AIVAGETLR 509

Query: 345 LEC-LPKDPQSAVEWYRQGALLNQLPELAARSEVAANGSLVV-RVTTSSDPGEY 500
           + C +   P  ++ W R   +L     +  + +V  NG+L++  V   SD   Y
Sbjct: 510 VTCPVAGYPIESIVWERDTRVL----PINRKQKVFPNGTLIIENVERMSDQATY 559



 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 162  SINVTAVRETDAGLYRCLV 218
            S+ +  V  TDAG Y C V
Sbjct: 1330 SLFIKEVDRTDAGEYSCYV 1348


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 6   PFGHEIPYRLQWDKDGETIFSWYSTEGS 89
           P G EIP  LQ    G+  + +Y+T  S
Sbjct: 105 PAGAEIPSNLQLYLGGDLDWKYYTTNES 132


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 12  GHEIPYRLQWDKDGETIFSW 71
           G+ I  ++ WDK+ E +  W
Sbjct: 328 GNPICVQIPWDKNVEALAKW 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,877
Number of Sequences: 438
Number of extensions: 1650
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)