Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0341
         (500 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10650.1 68416.m01281 expressed protein                             29   1.8  
At3g51630.1 68416.m05662 protein kinase family protein contains ...    29   2.3  
At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomerase cyc...    27   7.1  
At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein...    27   7.1  
At4g03740.1 68417.m00513 hypothetical protein                          27   7.1  
At4g16140.1 68417.m02445 proline-rich family protein contains pr...    27   9.4  

>At3g10650.1 68416.m01281 expressed protein
          Length = 1309

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +3

Query: 396 GALLNQLPELAARSEVAANGSLVVRVTTSSDPG 494
           G+ LN  P  AA S   ++GSL+  VT+SS PG
Sbjct: 906 GSTLN--PSTAAASAPESSGSLIFGVTSSSTPG 936


>At3g51630.1 68416.m05662 protein kinase family protein contains
           Pfam profile: PF00069 protein kinase domain
          Length = 549

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +3

Query: 363 DPQSAVEWYRQGALLNQLPELAARSEVAANGSLVVRVTTSSDP 491
           DP  A    R  A L +LP+  A   +AANG++V  + +++DP
Sbjct: 280 DPFLAATDERDLAPLFRLPQQLAIQNLAANGTVVEHLPSTTDP 322


>At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein contains Pfam domain,
           PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 595

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +3

Query: 42  DKDGETIFSWYSTEGSAQT 98
           DKD E I SWYS  GS  T
Sbjct: 520 DKDIEKIGSWYSNPGSGTT 538


>At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 341

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 288 NLIVTPPMNVTVLETERAELECLPKDPQSAVE 383
           N  + PP +  V E  RAE+   P +PQ+  E
Sbjct: 185 NSALRPPGSTAVPEANRAEMAKAPNEPQATKE 216


>At4g03740.1 68417.m00513 hypothetical protein 
          Length = 345

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +3

Query: 240 PARNNGTYYRLEVDGGNLIVTPPMNVTVLETERAELECLPKDP 368
           P+R++  +  LE     ++V    N+ +L+  R++    P DP
Sbjct: 255 PSRDSDIFAELEEKDKEILVLKEQNMKILDFMRSKFSDFPNDP 297


>At4g16140.1 68417.m02445 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 164

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 231 RTPPARNNGTYYRLEV-DGGNLIVTPPMNVTV 323
           R PP+ ++G YY      GGN   TPP N  V
Sbjct: 91  RPPPSSSSGGYYYPPPKSGGNYPYTPPPNPIV 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,164,044
Number of Sequences: 28952
Number of extensions: 112295
Number of successful extensions: 348
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)