Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0340
         (668 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0D7P6 Cluster: Chromosome undetermined scaffold_40, wh...    35   2.0  
UniRef50_Q02679 Cluster: Dod COI i7 grp IB protein b; n=2; Podos...    33   4.7  
UniRef50_Q7Z5K1 Cluster: Leukocyte-derived arginine aminopeptida...    33   6.2  
UniRef50_Q6P179 Cluster: LRAP protein; n=5; Euteleostomi|Rep: LR...    33   6.2  

>UniRef50_A0D7P6 Cluster: Chromosome undetermined scaffold_40, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_40,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1028

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = +3

Query: 528 QKKNRHIAFYKPDKYSNGQSDKFHLKFYFHIHQT*VNSILLIIMN 662
           ++  R+  +YK  +Y N   ++F  KF FH+H T +N ++ ++ N
Sbjct: 428 ERNIRYTIYYKKKEYQNQIMNQF--KFNFHVHSTKLNQLMQLVYN 470


>UniRef50_Q02679 Cluster: Dod COI i7 grp IB protein b; n=2;
           Podospora anserina|Rep: Dod COI i7 grp IB protein b -
           Podospora anserina
          Length = 325

 Score = 33.5 bits (73), Expect = 4.7
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +2

Query: 344 SITLLIYVAFIHFNYKIILNVICFLNLILSYQRKHGRTASHYLNGFHNKI*NTFIHY 514
           +IT+ +Y   +   Y I++N +CF N   S+ +K   +  HY +   NK  N  I++
Sbjct: 1   AITVPVYGFDVLVIYSILVNFLCFYNFSYSWSKKSNSSLRHYSDN-KNKNQNKLIYW 56


>UniRef50_Q7Z5K1 Cluster: Leukocyte-derived arginine aminopeptidase
           long form variant; n=17; Eutheria|Rep: Leukocyte-derived
           arginine aminopeptidase long form variant - Homo sapiens
           (Human)
          Length = 960

 Score = 33.1 bits (72), Expect = 6.2
 Identities = 16/52 (30%), Positives = 30/52 (57%)
 Frame = +1

Query: 325 IKFMYRKYYTFDLRRIHSL*L*NYLKRYLFFKFNPVLPKKAWSDCFTLFERI 480
           + ++   Y+  D R I  +     LKRYL   F PV+ +++WSD  ++++R+
Sbjct: 700 LSYLESFYHMMDRRNISDIS--ENLKRYLLQYFKPVIDRQSWSDKGSVWDRM 749


>UniRef50_Q6P179 Cluster: LRAP protein; n=5; Euteleostomi|Rep: LRAP
           protein - Homo sapiens (Human)
          Length = 915

 Score = 33.1 bits (72), Expect = 6.2
 Identities = 16/52 (30%), Positives = 30/52 (57%)
 Frame = +1

Query: 325 IKFMYRKYYTFDLRRIHSL*L*NYLKRYLFFKFNPVLPKKAWSDCFTLFERI 480
           + ++   Y+  D R I  +     LKRYL   F PV+ +++WSD  ++++R+
Sbjct: 655 LSYLESFYHMMDRRNISDIS--ENLKRYLLQYFKPVIDRQSWSDKGSVWDRM 704


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 533,440,080
Number of Sequences: 1657284
Number of extensions: 9578489
Number of successful extensions: 22067
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22063
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51239674196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)