Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0340
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces po...    26   4.3  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    26   4.3  

>SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 171

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -1

Query: 305 EVFLNIHSFPYVLFQRH*STKCRSPRMSALSISIFTRICYIHFINY 168
           E F   + F   +F+ +    CRS R S  +  I T++ Y +  NY
Sbjct: 112 EEFSKTYGFSKPVFEDNVVVYCRSGRRSTTASDILTKLGYKNIGNY 157


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
 Frame = +1

Query: 421 FNPVLPKKA--WSDCFTLFERISQ*DLKHFHTLH-SSYLKKKI 540
           F P  PK+   +++  TLF+R  +  LK  ++LH SS L KK+
Sbjct: 110 FEPRKPKQKQDYTNSPTLFKRHDELSLKSLNSLHPSSALSKKL 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,436,087
Number of Sequences: 5004
Number of extensions: 47365
Number of successful extensions: 101
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)