Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0340
         (668 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50857-2|CAA90718.1|  219|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z81123-5|CAB76411.2|  393|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z50071-9|CAA90404.3|  393|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>Z50857-2|CAA90718.1|  219|Caenorhabditis elegans Hypothetical
           protein F11A1.2 protein.
          Length = 219

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +1

Query: 490 DLKHFHTLHSSYLKKK 537
           D +H HTLHS+++K+K
Sbjct: 77  DAEHTHTLHSTFIKRK 92


>Z81123-5|CAB76411.2|  393|Caenorhabditis elegans Hypothetical
           protein T07D4.1 protein.
          Length = 393

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +3

Query: 474 TDFTIRFETLSYTTQFISQKKNRHIAFYKPDKYSNGQSDKFHLKFYFHIHQT*VNSILL 650
           +++T+ F+ LSY   FIS   N  +      ++ N  SD  H +  + I       IL+
Sbjct: 333 SNWTMIFQPLSYIFLFISSAINPILYACLSKRFRNALSDVIHCRLVYKIFHRNTTYILI 391


>Z50071-9|CAA90404.3|  393|Caenorhabditis elegans Hypothetical
           protein T07D4.1 protein.
          Length = 393

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +3

Query: 474 TDFTIRFETLSYTTQFISQKKNRHIAFYKPDKYSNGQSDKFHLKFYFHIHQT*VNSILL 650
           +++T+ F+ LSY   FIS   N  +      ++ N  SD  H +  + I       IL+
Sbjct: 333 SNWTMIFQPLSYIFLFISSAINPILYACLSKRFRNALSDVIHCRLVYKIFHRNTTYILI 391


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,986,799
Number of Sequences: 27780
Number of extensions: 250090
Number of successful extensions: 592
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)