Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0338
         (736 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like pr...    23   2.6  
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    22   5.9  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    22   5.9  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    22   5.9  

>DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like
           protein protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +1

Query: 94  CVTHEQPNSRKRSWSLEECSICFEIMLKDQELMALPC 204
           C +  QP+    +  L+EC  C E  L+++ +    C
Sbjct: 63  CKSQVQPSVITPTGFLKECYCCRESFLRERTITLTHC 99


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 310 FLLPLSPSIRRPSGNWGTSVS 248
           ++ PLS S+R    NWG++ S
Sbjct: 199 YIPPLSTSMRSHLCNWGSANS 219


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 310 FLLPLSPSIRRPSGNWGTSVS 248
           ++ PLS S+R    NWG++ S
Sbjct: 359 YIPPLSTSMRSHLCNWGSANS 379


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 310 FLLPLSPSIRRPSGNWGTSVS 248
           ++ PLS S+R    NWG++ S
Sbjct: 359 YIPPLSTSMRSHLCNWGSANS 379


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,590
Number of Sequences: 336
Number of extensions: 2948
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)