Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0338
(736 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 55 9e-09
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 52 9e-08
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 48 2e-06
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 47 2e-06
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi... 44 3e-05
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 44 3e-05
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 42 9e-05
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 42 9e-05
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 42 9e-05
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 42 9e-05
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 40 3e-04
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 39 8e-04
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 38 0.002
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 38 0.002
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 36 0.008
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 35 0.010
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 35 0.010
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 34 0.024
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 34 0.024
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 32 0.098
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 31 0.13
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 30 0.39
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo... 29 0.69
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.69
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 29 0.91
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 28 1.6
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 26 6.4
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 25 8.5
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 55.2 bits (127), Expect = 9e-09
Identities = 20/43 (46%), Positives = 27/43 (62%)
Frame = +1
Query: 145 ECSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQTCPNCR 273
EC+IC E+ + +++ LPC H FH CI PWL+ TC CR
Sbjct: 395 ECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICR 437
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 52.0 bits (119), Expect = 9e-08
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 118 SRKRSWSLEECSICFEIMLKDQELMALPCTHNFHSQCIMPWLQE-KQTCPNCRKD 279
S +R+ EC IC E K +++ALPC H FH CI W+ + + CP C +
Sbjct: 311 STRRATFGVECVICLESFTKGDKVVALPCKHEFHRPCIAKWIVDYRHACPTCNTE 365
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 47.6 bits (108), Expect = 2e-06
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +1
Query: 148 CSICFEIMLKDQELMA--LPCTHNFHSQCIMPWLQEKQTCPNCRKD 279
C IC++ M ++ E A +PC H F C+ WL+ TCP CRK+
Sbjct: 107 CPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLCRKE 152
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 47.2 bits (107), Expect = 2e-06
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 148 CSICFEIMLKDQELMALPCTHNFHSQCIMPWLQE-KQTCPNCRKD 279
C IC+ D L LPC H FH+QCI W+ K +CP C +D
Sbjct: 205 CIICYADYAFDDILRVLPCEHVFHTQCIDTWMTTMKASCPLCNED 249
>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
Dma1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 43.6 bits (98), Expect = 3e-05
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +1
Query: 145 ECSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQ---TCPNCRK 276
EC IC +L Q L PC+H++H +CI P L E +C CRK
Sbjct: 191 ECCICLMPVLPCQALFVAPCSHSYHYKCIRPTLNESHPYFSCFICRK 237
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 43.6 bits (98), Expect = 3e-05
Identities = 18/74 (24%), Positives = 26/74 (35%)
Frame = +1
Query: 112 PNSRKRSWSLEECSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQTCPNCRKDA*SK 291
PN W L + +PC H FH+ C+ W + TCP CR +
Sbjct: 26 PNCPLDQWDSSSVPASISSTLDGLRIAKIPCGHYFHNHCLESWCRVANTCPLCRTEFLKV 85
Query: 292 VIKEVKSADWINVF 333
+ E W +
Sbjct: 86 DVLEFVKGPWYRAY 99
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 41.9 bits (94), Expect = 9e-05
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 169 MLKDQELMALPCTHNFHSQCIMPWLQEKQTCPNCR 273
M+ + M PC H +H QC++ W++ + CP CR
Sbjct: 636 MMVRRNYMLTPCHHLYHRQCLLQWMETRSICPVCR 670
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 41.9 bits (94), Expect = 9e-05
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 145 ECSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQTCPNCRK 276
EC IC E + Q C H + +C++ WL+E ++CP CR+
Sbjct: 84 ECPICTEAL---QRPFTTHCGHTYCYECLLNWLKESKSCPTCRQ 124
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 41.9 bits (94), Expect = 9e-05
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 196 LPCTHNFHSQCIMPWLQEKQTCPNCRK 276
LPC H H C+ WL+ +QTCP CR+
Sbjct: 326 LPCGHILHFHCLRNWLERQQTCPICRR 352
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 41.9 bits (94), Expect = 9e-05
Identities = 24/63 (38%), Positives = 29/63 (46%)
Frame = +1
Query: 145 ECSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQTCPNCRKDA*SKVIKEVKSADWI 324
EC ICF ML D + PC H F C+M L + CP CR S V+ E + I
Sbjct: 168 ECQICFG-MLYDP--VVSPCGHTFCGPCLMQALTQSPQCPTCRFGLPSPVVLEHAKSHSI 224
Query: 325 NVF 333
F
Sbjct: 225 TTF 227
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +1
Query: 139 LEECSICFEIMLKDQEL---MALPCTHNFHSQCIMPWLQEKQT--CPNCR 273
+EEC+IC+ ++ ++ L C H FH+ C+ W + + CP CR
Sbjct: 1555 VEECAICYSVLSVERTLPNKRCGTCRHKFHASCLYKWFKSSNSSRCPLCR 1604
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 38.7 bits (86), Expect = 8e-04
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +1
Query: 142 EECSICFE-IMLKDQELMALPCTHNFHSQCIMPWLQEKQ-TCPNCR 273
E C +C L D+ C H FH +CI WL Q +CP CR
Sbjct: 523 ERCLVCLSNFELNDECRRLKQCNHFFHRECIDQWLTSSQNSCPLCR 568
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 37.5 bits (83), Expect = 0.002
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 148 CSICFEIMLKDQE-LMALPCTHNFHSQCIMPWLQEKQTCPNCRK 276
C IC E M +E ++ L C+H H +C +++ CP C K
Sbjct: 271 CPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRTNYRCPTCYK 314
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 37.5 bits (83), Expect = 0.002
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 145 ECSICFEIMLKDQELMA-LPCTHNFHSQCIMPW-LQEKQTCPNCRK 276
EC+IC ++ L LPC H FH CI P+ L+ CP C++
Sbjct: 497 ECTICLCEYSEESPLYRELPCHHIFHPACIDPYLLKNSDLCPLCKQ 542
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 35.5 bits (78), Expect = 0.008
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +1
Query: 115 NSRKRSWSLEECSICFEIMLKDQELMAL-PCTHN-FHSQCIMPWLQEKQTCPNCRK 276
NS + +C IC + KD L PC H+ F CI W+ + TCP C++
Sbjct: 10 NSSNSRYLRRDCVICLQ---KDGLRAQLSPCGHDQFDYSCICRWMDQSLTCPICKR 62
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 35.1 bits (77), Expect = 0.010
Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +1
Query: 136 SLEECSICFEIMLKDQELMALP-CTHNFHSQCIMPWLQE-KQTCPNCR 273
S + C IC E L C H FH CI WL +CP CR
Sbjct: 762 SADSCLICLETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCPLCR 809
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 35.1 bits (77), Expect = 0.010
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +1
Query: 139 LEECSICFEIMLKD-QELMALPCTHNFHSQCIMPWLQEKQTCPNCR 273
L C +C E M L+ + C H FH C+ W +CP CR
Sbjct: 205 LPTCVVCLERMDSSITGLITIVCQHTFHCPCLQKW--GNSSCPVCR 248
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 33.9 bits (74), Expect = 0.024
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 148 CSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQTCPNCR 273
C IC E + + C+H F S CI +L+E CP CR
Sbjct: 29 CLICHEYF---RAPLITSCSHTFCSFCIRDYLREHPMCPACR 67
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 33.9 bits (74), Expect = 0.024
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 145 ECSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQTCPNCRK-DA*SKVI 297
+CS+C E + A C H F CI W +K CP CR + SK+I
Sbjct: 255 KCSLCMEFIHCPA---ATECGHIFCWSCINGWTSKKSECPLCRAFSSPSKII 303
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 31.9 bits (69), Expect = 0.098
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +1
Query: 202 CTHNFHSQCIMPWLQEKQTCP 264
C H FH CI WL + CP
Sbjct: 74 CNHAFHFHCISRWLNTRNVCP 94
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 31.5 bits (68), Expect = 0.13
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 148 CSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQTCPNCR 273
C IC +I+ ++ C H + S C+ WL+ +CP C+
Sbjct: 1092 CIICRDII---KQGFITTCGHLYCSFCLEAWLKHSSSCPMCK 1130
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 29.9 bits (64), Expect = 0.39
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 145 ECSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEK-QTCPNC 270
+CS+C K + + C H F S C+ P+ + K TCP C
Sbjct: 638 KCSVCNFSNWKSK--LIPNCGHAFCSNCMEPFYEHKTSTCPQC 678
>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
Sir2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 29.1 bits (62), Expect = 0.69
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 622 KRKLLKIFTQ-ISNAERLFGLSDNSLI 699
K KL +FTQ I N E+ GLSDN +I
Sbjct: 237 KNKLSTLFTQNIDNLEKKTGLSDNKII 263
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.1 bits (62), Expect = 0.69
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +1
Query: 139 LEECSICFEIMLKDQELMAL-PCTHNFHSQCIMPW 240
L ECS+C + + + + C H FH CI W
Sbjct: 194 LYECSVCTDTINPSTSIWSCGTCYHVFHLSCIRKW 228
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 28.7 bits (61), Expect = 0.91
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = +1
Query: 145 ECSICFEIMLKDQELMALPCTHNFHSQCIMPWL---QEKQTCPNCRK 276
+C IC + + L PC H F + CI+ L Q CP CR+
Sbjct: 205 KCVICLD---SPENLSCTPCGHIFCNFCILSALGTTAATQKCPVCRR 248
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +1
Query: 202 CTHNFHSQCIMPWLQEKQTCPNCRKDA*SKVIKE 303
C H FH+ CI WL + C D + V+ +
Sbjct: 52 CKHIFHAHCIQNWLATSGSQGQCPMDRQTFVVAD 85
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +1
Query: 190 MALPCTHNFHSQCIMPWLQEKQTCPNCRKD 279
+A C H+F QC + ++ TC C D
Sbjct: 265 IATTCGHHFCEQCAITRYRKTPTCIQCGAD 294
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Frame = +1
Query: 115 NSRKRSWSLEECSICFEIM--LKDQELMALPCTHNFHSQCIM 234
N R R LE C+ L + + PC H FH C++
Sbjct: 823 NMRNRYIVLEPNESCWHCNQPLFSEPFVLFPCQHAFHRSCML 864
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,706,824
Number of Sequences: 5004
Number of extensions: 49975
Number of successful extensions: 124
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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