Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0338
(736 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12) 53 3e-07
SB_49946| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 5e-07
SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07) 47 1e-05
SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18) 45 6e-05
SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13) 43 2e-04
SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037) 41 0.001
SB_39493| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-09) 41 0.001
SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08) 40 0.002
SB_39560| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00055) 40 0.003
SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_14063| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 39 0.005
SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021) 36 0.026
SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.026
SB_20056| Best HMM Match : zf-C3HC4 (HMM E-Value=9e-11) 36 0.034
SB_7987| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.045
SB_57688| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 36 0.045
SB_30093| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08) 36 0.045
SB_36597| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 35 0.060
SB_8003| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.079
SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079) 35 0.079
SB_29221| Best HMM Match : zf-C3HC4 (HMM E-Value=7.5e-10) 34 0.10
SB_16517| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07) 34 0.10
SB_51714| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.14
SB_19621| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.14
SB_42817| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12) 33 0.18
SB_31116| Best HMM Match : zf-C3HC4 (HMM E-Value=5.6e-10) 33 0.24
SB_56644| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 33 0.24
SB_30107| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07) 33 0.24
SB_18584| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.24
SB_23154| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.32
SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23) 33 0.32
SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.42
SB_57032| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.55
SB_37345| Best HMM Match : zf-B_box (HMM E-Value=1.3e-23) 32 0.55
SB_57045| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.55
SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08) 32 0.55
SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18) 31 0.73
SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18) 31 0.73
SB_38572| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0034) 31 0.73
SB_4080| Best HMM Match : zf-C3HC4 (HMM E-Value=0.23) 31 0.73
SB_20928| Best HMM Match : NHL (HMM E-Value=0) 31 1.3
SB_39287| Best HMM Match : NHL (HMM E-Value=1.5e-21) 31 1.3
SB_9017| Best HMM Match : zf-C3HC4 (HMM E-Value=7.9e-12) 31 1.3
SB_2427| Best HMM Match : zf-C3HC4 (HMM E-Value=0.3) 30 1.7
SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_11042| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00013) 30 2.2
SB_6860| Best HMM Match : zf-C3HC4 (HMM E-Value=0.14) 30 2.2
SB_44019| Best HMM Match : TPR_2 (HMM E-Value=4.9e-12) 29 3.0
SB_11518| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_16508| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_47634| Best HMM Match : Metallophos (HMM E-Value=1e-11) 29 5.2
SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_41628| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_54069| Best HMM Match : zf-C3HC4 (HMM E-Value=0.91) 28 9.0
SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_31765| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_7109| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0029) 28 9.0
SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08) 28 9.0
SB_33822| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0022) 28 9.0
>SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12)
Length = 558
Score = 52.8 bits (121), Expect = 3e-07
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = +1
Query: 145 ECSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQTCPNC 270
+C IC E Q+L +PC H FH +C+ PWL TCP C
Sbjct: 213 KCVICLEGFKNGQDLRIVPCRHEFHKECVDPWLLSNFTCPLC 254
>SB_49946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 52.4 bits (120), Expect = 4e-07
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +1
Query: 106 EQPNSRKRSWSLEECSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQTCPNCRKD 279
E + + S C IC K + +PC H FH CI+PWL++ +CP CR +
Sbjct: 48 EVTDKHLKELSTSSCPICLGDYEKGESTKQMPCDHLFHPGCILPWLEKTNSCPVCRHE 105
>SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 402
Score = 52.0 bits (119), Expect = 5e-07
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +1
Query: 148 CSICFEIMLKDQELMALPCTHNFHSQCIMPWLQE-KQTCPNCRK 276
C+IC + + +L LPC H +H +C+ PWL E K+TCP C++
Sbjct: 301 CAICLDEYKEGDKLRILPCDHAYHCKCVDPWLTEGKRTCPVCKR 344
>SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)
Length = 617
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Frame = +1
Query: 130 SWSLE--ECSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQT-----CPNCR 273
SW + EC IC + L+ LPC H+FH CI WL T CPNCR
Sbjct: 552 SWMIPCGECVICLDEFKPGCTLLGLPCGHSFHQHCIEVWLAGDNTAPHHCCPNCR 606
>SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18)
Length = 398
Score = 45.2 bits (102), Expect = 6e-05
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +1
Query: 124 KRSWSLEECSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQTCPNCRK 276
K+ + + C IC E + L C H + C+ WL+ TCP CRK
Sbjct: 254 KKRYESKSCPICLEEFTPETPTRLLVCGHKYCEPCLSRWLENNTTCPICRK 304
>SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)
Length = 553
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = +1
Query: 148 CSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQTCPNCRKDA*SKVIKEV 306
C +C E+ ++ L C+H+F C+ WL+++ TCP CR S+ ++ +
Sbjct: 371 CIVCQELFIR---ATTLTCSHSFCEYCLQSWLRKRNTCPICRCAVQSQPVRSI 420
>SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)
Length = 303
Score = 41.1 bits (92), Expect = 0.001
Identities = 16/32 (50%), Positives = 17/32 (53%)
Frame = +1
Query: 148 CSICFEIMLKDQELMALPCTHNFHSQCIMPWL 243
C IC E + LPC HNFHS CI WL
Sbjct: 257 CLICMEEYAVGDSMKYLPCRHNFHSACIRTWL 288
>SB_39493| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-09)
Length = 310
Score = 41.1 bits (92), Expect = 0.001
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = +1
Query: 148 CSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQTCPNCRK 276
C IC +++ ++ LMA PC H++ S C++ WL TCP R+
Sbjct: 18 CCICRDVL--EEPLMA-PCEHSYCSACVLGWLTHYNTCPEDRQ 57
>SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08)
Length = 688
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Frame = +1
Query: 139 LEECSICF-----EIMLKDQELMALPCTHNFHSQCIMPWLQEKQTCPNCR 273
L C +CF ++ L Q +M C H F CI W +QTCP CR
Sbjct: 474 LRTCKVCFVMPTCQVKLAKQ-IMLRTCKHIFCEDCISLWFDREQTCPMCR 522
>SB_39560| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00055)
Length = 545
Score = 39.5 bits (88), Expect = 0.003
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 115 NSRKRSWSLEECSICFEIMLKDQELMALPCTHNFHSQCIMPWLQ 246
++ + S C +C ++L LPC H+FHS+CI WL+
Sbjct: 350 SASNKDMSNGSCVVCMMDYTNREKLRKLPCNHDFHSKCIDRWLK 393
>SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 39.5 bits (88), Expect = 0.003
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 145 ECSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQTCP 264
+C ICF ++ ++ + C H F SQC++ W+ E TCP
Sbjct: 56 KCGICFGVL---EDPLVTTCGHVFCSQCLVHWIAENGTCP 92
>SB_14063| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 301
Score = 38.7 bits (86), Expect = 0.005
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +1
Query: 148 CSICFEIMLKDQELMALPCTHNFHSQCIMPWLQE---KQTCPNCRKDA*SKVIKEVK 309
C+IC E++ + +A PC H F CI WL + K CP C+ S V+ +++
Sbjct: 160 CAICKEVLTQP---IATPCDHYFCVLCICEWLDQTYNKSGCPVCKASISSNVLHKIQ 213
>SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)
Length = 358
Score = 36.3 bits (80), Expect = 0.026
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 148 CSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEK 252
C +C + Q + LPC H +H++CI WL+ +
Sbjct: 293 CVVCLVDFEEKQLVRTLPCLHEYHTRCIDKWLKNR 327
>SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 482
Score = 36.3 bits (80), Expect = 0.026
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +1
Query: 148 CSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQTCP 264
C +C Q + L C H FH CI WL + CP
Sbjct: 212 CGVCLSAYHPLQYVRKLQCRHVFHRDCIDSWLATQSICP 250
>SB_20056| Best HMM Match : zf-C3HC4 (HMM E-Value=9e-11)
Length = 471
Score = 35.9 bits (79), Expect = 0.034
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 145 ECSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQTCPNCRKDA*SKVIKEVKSA 315
EC +CF ++L E + C H+F C+ L + CP CR +K++ E + A
Sbjct: 329 ECKLCFNLLL---EPVTSLCGHSFCRDCLYRSLDHRVECPCCRAPL-TKILAERRQA 381
>SB_7987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 466
Score = 35.5 bits (78), Expect = 0.045
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +1
Query: 148 CSICFEIMLKDQELMALPCTHNFHSQCIMPWLQE---KQTCPNCR 273
C+IC E++ + +A PC H F CI WL + K CP C+
Sbjct: 160 CAICKEVLTQP---IATPCDHYFCVLCICEWLDQTYNKSGCPVCK 201
>SB_57688| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 262
Score = 35.5 bits (78), Expect = 0.045
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +1
Query: 148 CSICFEIMLKDQELMALPCTHNFHSQCIMPWLQE---KQTCPNCR 273
C+IC E++ + +A PC H F CI WL + K CP C+
Sbjct: 34 CAICKEVLTQP---IATPCDHYFCVLCICEWLDQTYNKSGCPVCK 75
>SB_30093| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
Length = 301
Score = 35.5 bits (78), Expect = 0.045
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +1
Query: 148 CSICFEIMLKDQELMALPCTHNFHSQCIMPWLQE---KQTCPNCR 273
C+IC E++ + +A PC H F CI WL + K CP C+
Sbjct: 160 CAICKEVLTQP---IATPCDHYFCVLCICEWLDQTYNKSGCPVCK 201
>SB_36597| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 346
Score = 35.1 bits (77), Expect = 0.060
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 148 CSICFEIMLKDQELMALPCTHNFHSQCIMPWLQ--EKQTCPNCR 273
C+IC ++ + + C H+F C+ WL E Q+CP+CR
Sbjct: 18 CNICVGVL---ENAITTICGHSFCESCLETWLSRPEVQSCPSCR 58
>SB_8003| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 34.7 bits (76), Expect = 0.079
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Frame = +1
Query: 148 CSICFEIMLKDQELMALPCTHNFHSQCIMPW------LQEKQTCPNCRKD 279
C ICF ++ CT HS+C+ W ++QTCP CR D
Sbjct: 5 CCICFSE--ENLNTSTFCCTQKIHSECLTQWNNAQAANNQQQTCPFCRSD 52
>SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079)
Length = 689
Score = 34.7 bits (76), Expect = 0.079
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +1
Query: 148 CSICFEIMLKDQELMALPCTHN-FHSQCIMPW----LQEKQTCPNCRK 276
C IC E D EL LPC H C+ W L + TCP+CRK
Sbjct: 184 CIICCE---GDDELELLPCCKQPCHYPCLWKWVHAHLTPRSTCPHCRK 228
>SB_29221| Best HMM Match : zf-C3HC4 (HMM E-Value=7.5e-10)
Length = 337
Score = 34.3 bits (75), Expect = 0.10
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 148 CSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQ-TCPNCR 273
C IC ++++ E + LPC H F C +QE CP CR
Sbjct: 37 CPICLQLLV---EPVVLPCEHEFCKMCFTQNVQEANLQCPMCR 76
>SB_16517| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)
Length = 306
Score = 34.3 bits (75), Expect = 0.10
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Frame = +1
Query: 148 CSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEK--------QTCPNCRKD 279
C IC E++ + + PC H+F C+ W+ K +CP+CR D
Sbjct: 18 CGICAEVL---ERAVLTPCGHSFCGVCLETWMNAKLEENEKCPASCPSCRAD 66
>SB_51714| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 542
Score = 33.9 bits (74), Expect = 0.14
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Frame = +1
Query: 148 CSICFEIMLKDQELMAL-PCTHN-FHSQCIMPW----LQEKQTCPNCRKD 279
C IC E D ELM L PC H C+ W L + TCP+CRK+
Sbjct: 7 CIICCE---GDDELMELLPCCKQPCHHPCMWKWIHAHLTPRSTCPHCRKE 53
>SB_19621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 730
Score = 33.9 bits (74), Expect = 0.14
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 6/32 (18%)
Frame = +1
Query: 196 LPCTHNFHSQCIMPWLQE------KQTCPNCR 273
LPC H++ ++CI PW++ TCP CR
Sbjct: 289 LPCLHHYCAKCIDPWIKTCSDQGINSTCPECR 320
>SB_42817| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12)
Length = 539
Score = 33.5 bits (73), Expect = 0.18
Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Frame = +1
Query: 148 CSICFEIMLKDQELMAL-PCTHN-FHSQCIMPW----LQEKQTCPNCRK 276
C IC E D ELM L PC H C+ W L + TCP+CRK
Sbjct: 11 CIICCE---GDDELMQLLPCCKQPCHHPCLWKWVHAHLTPRSTCPHCRK 56
>SB_31116| Best HMM Match : zf-C3HC4 (HMM E-Value=5.6e-10)
Length = 169
Score = 33.1 bits (72), Expect = 0.24
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 148 CSICFEIMLKDQELMALPCTHNFHSQCIMPWLQ--EKQTCPNC 270
C +C ++K + C H F CI+ +LQ E TCP+C
Sbjct: 64 CGLCEGYLIKPTTITE--CLHTFCKSCIVTYLQDSEDNTCPSC 104
>SB_56644| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 858
Score = 33.1 bits (72), Expect = 0.24
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +1
Query: 145 ECSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQTCPNCR 273
EC IC E + + L C H F CI + + CP CR
Sbjct: 677 ECPICLETITYPETLQG--CGHTFCRPCITEASKSSKLCPTCR 717
>SB_30107| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
Length = 911
Score = 33.1 bits (72), Expect = 0.24
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +1
Query: 145 ECSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQTCPNCR 273
EC IC E + + L C H F CI + + CP CR
Sbjct: 752 ECPICLETITYPETLQG--CGHTFCRPCITEASKSSKLCPTCR 792
>SB_18584| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1022
Score = 33.1 bits (72), Expect = 0.24
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +1
Query: 133 WSLEECSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQ---TCPNCRKD 279
W ++ +IC + PC H+F +C+ + E+Q CP+C+ D
Sbjct: 397 WCIKMSTICGVCRETYTDPRVAPCLHSFCKECVTKLVTERQGKFVCPDCQAD 448
>SB_23154| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1051
Score = 32.7 bits (71), Expect = 0.32
Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Frame = +1
Query: 148 CSICFEIMLKDQELMAL-PCTHN-FHSQCIMPW----LQEKQTCPNCRK 276
C IC E D ELM L PC H C+ W L + TCP+CRK
Sbjct: 11 CIICCE---GDDELMELLPCCKQPCHFPCLWKWIHAHLTPRATCPHCRK 56
>SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23)
Length = 877
Score = 32.7 bits (71), Expect = 0.32
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +1
Query: 100 THEQPNSRKRSWSLEECSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQT----CPN 267
TH + S+ C IC +L+D + LPC H + +CI + +Q+ CP+
Sbjct: 129 THRETGSQDDIRQQLACGIC-HALLRDARV--LPCLHTYCRRCIEDIILHRQSVRAHCPS 185
Query: 268 CRKD 279
C ++
Sbjct: 186 CNRE 189
>SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1716
Score = 32.3 bits (70), Expect = 0.42
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 202 CTHNFHSQCIMPWLQEKQTCPNC 270
C H+F CI+ WLQ CP C
Sbjct: 1382 CLHSFCRSCIVSWLQASYHCPVC 1404
>SB_57032| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 446
Score = 31.9 bits (69), Expect = 0.55
Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Frame = +1
Query: 148 CSICFEIMLKDQELMAL-PCTHN-FHSQCIMPW----LQEKQTCPNCRK 276
C IC E D ELM L PC H C+ W L + TCP+CRK
Sbjct: 11 CIICCE---GDDELMELHPCCKQPCHYICLWKWIHAHLTPRATCPHCRK 56
>SB_37345| Best HMM Match : zf-B_box (HMM E-Value=1.3e-23)
Length = 581
Score = 31.9 bits (69), Expect = 0.55
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +1
Query: 148 CSICFEIMLKDQELMALPCTHNFHSQC---IMPWLQEKQTCPNCRKD 279
C +C E+ + LPC H F +C ++P +CP+CR D
Sbjct: 145 CPLCHEMFANPR---LLPCLHTFCKRCLENLVPPRSHTLSCPSCRLD 188
>SB_57045| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 31.9 bits (69), Expect = 0.55
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +1
Query: 106 EQPNSRKRSWSLEECSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQT-----CPNC 270
++ N +R EC IC E KD + LPC H F +C++ +T CP C
Sbjct: 2 DKTNIEERLQKEVECPICLE-RFKDPRV--LPCLHTFCYECLVGLASRYKTEGKWPCPQC 58
Query: 271 R 273
+
Sbjct: 59 K 59
>SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08)
Length = 1631
Score = 31.9 bits (69), Expect = 0.55
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Frame = +1
Query: 106 EQPNSRKRSWSLEE--CSICFEIMLKDQELMALP-CTHNFHSQCIMPWLQEKQ---TCPN 267
E P+ R +S EE C +C E+ +E + LP C H+ QC+ + CP
Sbjct: 7 ESPDMRAKSVQREEISCPVCLEVF---EEPLVLPSCGHSVCLQCLQNMTKRNPPSLLCPV 63
Query: 268 CRKDA 282
CR ++
Sbjct: 64 CRSES 68
>SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)
Length = 1284
Score = 31.5 bits (68), Expect = 0.73
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 130 SWSLEECSICFEIMLKDQELMALPCTHNFHSQCIMP 237
SW + CS C +D+ LM C +H C+ P
Sbjct: 857 SWCCDSCSTCVVCGQQDKLLMCDKCQRGYHVDCLGP 892
>SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18)
Length = 458
Score = 31.5 bits (68), Expect = 0.73
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 130 SWSLEECSICFEIMLKDQELMALPCTHNFHSQCIMP 237
SW + CS C +D+ LM C +H C+ P
Sbjct: 198 SWCCDSCSTCVVCGQQDKLLMCDKCQRGYHVDCLGP 233
>SB_38572| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0034)
Length = 671
Score = 31.5 bits (68), Expect = 0.73
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 175 KDQELMALPCTHNFHSQCIMPWLQEKQTCPNCR 273
K +E + P H F S C+ WL+ + CP CR
Sbjct: 109 KVKEPVVCPNQHVFCSPCLDLWLRTNRYCPTCR 141
>SB_4080| Best HMM Match : zf-C3HC4 (HMM E-Value=0.23)
Length = 203
Score = 31.5 bits (68), Expect = 0.73
Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Frame = +1
Query: 157 CFEI---MLKDQELMAL-PCTHNFHSQCIMPWLQEKQTCPN 267
C+++ ++ D ++L PC H+F + C W++ + CP+
Sbjct: 62 CYDVNVTLMSDSFSISLQPCMHSFCASCYSQWMEHSRDCPS 102
>SB_20928| Best HMM Match : NHL (HMM E-Value=0)
Length = 795
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Frame = +1
Query: 154 ICFEIMLKDQELMALPCTHNFHSQCIMPWLQE------KQTCPNCRKD 279
+C + M + LPC H F SQC+ L TCP C +D
Sbjct: 14 VCPKCMNAYENPKVLPCLHTFCSQCLSEELHRDCEGRLNVTCPKCLRD 61
>SB_39287| Best HMM Match : NHL (HMM E-Value=1.5e-21)
Length = 645
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +1
Query: 148 CSICFEIMLKDQELMALPCTHNFHSQCIMPWLQE---KQTCPNCR 273
CS+C E + +E LPC H F +C+ Q CP CR
Sbjct: 22 CSVCLE---QFREPKMLPCFHTFCKECLEKTKQSFRGNLLCPTCR 63
>SB_9017| Best HMM Match : zf-C3HC4 (HMM E-Value=7.9e-12)
Length = 203
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +1
Query: 145 ECSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQT-----CPNCR 273
EC IC E KD + LPC H F +C++ +T CP C+
Sbjct: 15 ECPICLE-RFKDPRV--LPCLHTFCYECLVGLASRYKTEGKWPCPQCK 59
>SB_2427| Best HMM Match : zf-C3HC4 (HMM E-Value=0.3)
Length = 378
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Frame = +1
Query: 187 LMALPCT-HNFHSQCIMPWLQ----EKQTCPNCR 273
L LPC + H QC W+ E+ TCP+CR
Sbjct: 46 LSRLPCCGQSCHQQCFWKWIHTHRTERITCPHCR 79
>SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 574
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = +1
Query: 148 CSICFEIMLKDQELMALPCTHNFHSQCIMPWLQ----EKQTCPNCR 273
C +C + +D+ L+ C +H +C+ L+ E+ CP CR
Sbjct: 153 CEVCHDCDREDRLLLCDDCDKGYHMECLTSPLEFVPIEEWFCPICR 198
>SB_11042| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00013)
Length = 499
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +1
Query: 136 SLEECSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQTCPNCR 273
S+ CSIC + + C F S CI WL+ C +CR
Sbjct: 328 SILVCSICMGV---PSTPVVTQCDQIFCSGCITAWLRNAGACSSCR 370
>SB_6860| Best HMM Match : zf-C3HC4 (HMM E-Value=0.14)
Length = 129
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Frame = +1
Query: 145 ECSICFEIMLKDQELMALP--CTHNFHSQCIMPWLQEKQ------TCPNCRK 276
EC IC E +++E+M C H +C+ W + ++ TCP+CRK
Sbjct: 2 ECLICKE---EEEEVMETINCCKQPMHHRCLNDWYKVQEYRGLLPTCPHCRK 50
>SB_44019| Best HMM Match : TPR_2 (HMM E-Value=4.9e-12)
Length = 654
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +1
Query: 145 ECSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQTCPNCR 273
EC++C + + PC H F C+ L + CP CR
Sbjct: 378 ECTLCCRLFYNP---VTTPCGHVFCRACLNRSLDHRPGCPICR 417
>SB_11518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1144
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = -2
Query: 336 KKNIDPVSAFYFLYHLRSGVLPAIGARLFLLKPGHDALRVKIVGAR*GHQLLILQHDLEA 157
K+ ++ ++ L + P +G+ LL PG + RVKIVG + G ++ ++A
Sbjct: 514 KRELEQINKELKAIPLTEQLFPQVGSLACLLLPGGERARVKIVGLQGGFHNGMMFPVIQA 573
Query: 156 D 154
D
Sbjct: 574 D 574
>SB_16508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +1
Query: 148 CSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQ---TCPNCRKDA 282
CS+C + ++ +L LPC H+F C+ + E CP C +A
Sbjct: 20 CSLCHRL-IRGPKL--LPCLHSFCLACLEDLVTENDVGFNCPQCHTEA 64
>SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 330
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = +1
Query: 145 ECSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQTCPNC 270
+C++C + D + C H+FH C + + CP C
Sbjct: 73 KCNLCSRPL--DLPAVHFLCLHSFHQPCFEGYAENDNECPIC 112
>SB_47634| Best HMM Match : Metallophos (HMM E-Value=1e-11)
Length = 585
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 153 HLLRDHAEGSGADGPTVHPQFSLAVHHALASGETDVP 263
H+ + SGA G HP F+ ++ H + GE VP
Sbjct: 362 HVSGGEKDPSGAPGEGFHPWFAPSLFHTDSGGECGVP 398
>SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1459
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Frame = +1
Query: 202 CTHNFHSQCIMPWL----QEKQTCPNCRK 276
C NFH +C+ P L + TCP C+K
Sbjct: 1212 CPRNFHLKCLEPPLVKMPRVSWTCPKCKK 1240
>SB_41628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 690
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +1
Query: 127 RSWSL--EECSICFEIMLKDQELMALPCTHNFHSQC 228
R W + +EC ICF +++ + C H+F ++C
Sbjct: 303 RDWFMVSKECGICFGDFRENKMTALMSCGHSFCTEC 338
>SB_54069| Best HMM Match : zf-C3HC4 (HMM E-Value=0.91)
Length = 355
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +1
Query: 178 DQELMALPCTHNFHSQCIMPWLQEKQTCPNCRKDA*SKV 294
D E++ L C + FH C+ Q CP C KV
Sbjct: 112 DTEILRLTCGYTFHDVCLQ---TNDQLCPFCTTSILEKV 147
>SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1442
Score = 27.9 bits (59), Expect = 9.0
Identities = 9/43 (20%), Positives = 23/43 (53%)
Frame = +1
Query: 121 RKRSWSLEECSICFEIMLKDQELMALPCTHNFHSQCIMPWLQE 249
R + + EC +C ++ +++ + L C F S C+ ++++
Sbjct: 996 RSKKFLQRECIVCMDLKPENRMITMLNCQCRFCSDCVSQYVKQ 1038
>SB_31765| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 148 CSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQTCPNCR 273
C IC E++ K E + THN C+ L +CP C+
Sbjct: 112 CPICSELLDKPVETIF---THNACGACLTQALAVNSSCPVCK 150
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 200 RAPTIFTRSASCPGFRRNRRAPIAGRTPDRR 292
R+P++ RS S G R RR+P R+P+RR
Sbjct: 131 RSPSLERRSRSRSGSRERRRSP--SRSPERR 159
>SB_7109| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0029)
Length = 232
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 148 CSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQTCPNCR 273
C IC E++ K E + THN C+ L +CP C+
Sbjct: 86 CPICCELLDKPVETIF---THNACGACLTQALAVNSSCPVCK 124
>SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
Length = 291
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Frame = +1
Query: 94 CVTHEQPNSRKRSWSLEE------CSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQ 255
C +E ++ R+ SL+E C +C ++ + + C H+F CI+ +L+
Sbjct: 24 CQGNEDISTMLRTLSLKELNPHIICVLCGGYLVDATTI--IECLHSFCRCCIVRYLETSY 81
Query: 256 TCPNC 270
CP C
Sbjct: 82 RCPVC 86
>SB_33822| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0022)
Length = 229
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 148 CSICFEIMLKDQELMALPCTHNFHSQCIMPWLQEKQTCPNCR 273
C IC E++ K E + THN C+ L +CP C+
Sbjct: 133 CPICSELLDKPVETIF---THNACGACLTQALAVNSSCPVCK 171
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,786,816
Number of Sequences: 59808
Number of extensions: 360250
Number of successful extensions: 791
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -