Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0338
         (736 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   5.2  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   5.2  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   6.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   6.9  

>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 94  CVTHEQPNSRKRSWSLEECSICFEIMLKDQELMALPC 204
           C +  QP+    +   +EC  C E  LK++ +    C
Sbjct: 73  CNSQVQPSVASTTGFSKECYCCRESYLKERHITLHHC 109


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 94  CVTHEQPNSRKRSWSLEECSICFEIMLKDQELMALPC 204
           C +  QP+    +   +EC  C E  LK++ +    C
Sbjct: 73  CNSQVQPSVASTTGFSKECYCCRESYLKERHITLHHC 109


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +1

Query: 421 VKYKKNGVKKNLSAASLARTICIMNHIICSR 513
           V+ ++N + +   +    RT C+ N + C R
Sbjct: 240 VRPRRNVLIERAKSIRARRTECVTNSVTCDR 270


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 165 DHAEGSGADGPTVHPQFSLAVHHAL 239
           DH +GS  DGP   P     +HH +
Sbjct: 149 DH-QGSVLDGPDSPPLVESQMHHQM 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,090
Number of Sequences: 438
Number of extensions: 3141
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)