Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0336
         (559 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    24   1.0  
DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory pro...    21   5.4  
DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory pro...    21   7.2  
DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory pro...    21   7.2  
AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical pro...    21   7.2  
DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory pro...    21   9.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   9.5  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   9.5  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   9.5  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   9.5  

>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
 Frame = -2

Query: 498 FKVLFVDTILNEN*TLHMQTLE-----KINHYWFE*ILTSSRLLLNKLNC 364
           F ++F D +  +  TLH  T +     + ++   + IL S RLLLN +NC
Sbjct: 12  FFIIFSDFVNGK--TLHRSTRDDKYTTRYDNVDVDRILHSKRLLLNYINC 59


>DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory
           protein 10 protein.
          Length = 129

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 432 KINHYWFE*ILTSSRLLLNKLNC 364
           K ++   E IL S RLL N  NC
Sbjct: 27  KYDNIDLEEILKSDRLLKNYFNC 49


>DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory
           protein 19 protein.
          Length = 119

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -2

Query: 405 ILTSSRLLLNKLNC 364
           IL S RLL N  NC
Sbjct: 31  ILASERLLKNYFNC 44


>DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory
           protein 12 protein.
          Length = 127

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 405 ILTSSRLLLNKLNC 364
           IL S RLL N +NC
Sbjct: 34  ILKSDRLLKNYVNC 47


>AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical
           protein protein.
          Length = 127

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 405 ILTSSRLLLNKLNC 364
           IL S RLL N +NC
Sbjct: 34  ILKSDRLLKNYVNC 47


>DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory
           protein 18 protein.
          Length = 124

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 405 ILTSSRLLLNKLNC 364
           IL++ RLL N +NC
Sbjct: 31  ILSNERLLKNYVNC 44


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 483  VDTILNEN*TLHMQTLEKINHY 418
            V++++ E    HMQTL   N Y
Sbjct: 1475 VNSVMAERRKSHMQTLGAKNEY 1496


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 483  VDTILNEN*TLHMQTLEKINHY 418
            V++++ E    HMQTL   N Y
Sbjct: 1475 VNSVMAERRKSHMQTLGAKNEY 1496


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 483  VDTILNEN*TLHMQTLEKINHY 418
            V++++ E    HMQTL   N Y
Sbjct: 1475 VNSVMAERRKSHMQTLGAKNEY 1496


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 483  VDTILNEN*TLHMQTLEKINHY 418
            V++++ E    HMQTL   N Y
Sbjct: 1475 VNSVMAERRKSHMQTLGAKNEY 1496


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,381
Number of Sequences: 336
Number of extensions: 2336
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13681771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)