Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0336
         (559 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         27   1.4  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   7.5  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    25   7.5  
SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma...    25   7.5  
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   10.0 

>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 162 HCREESPILSRRKHYFGGRFELLAWPVFPVRQDS 263
           HCR  SP  +    Y      LLAWP +  + DS
Sbjct: 266 HCRNSSPHDNPILEYLFALVSLLAWPFYRRKLDS 299


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 425 LIFSSVCICNV*FSFKIVSTNKTL 496
           LI +++C C +     IV+TNKTL
Sbjct: 109 LILAAIC-CTILIPINIVATNKTL 131


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 205 ISAGDLSSWPGLSSQYAKTRAFALAEKSKRGPGLFD 312
           IS  D ++W GL   YA++  +  A K+     + D
Sbjct: 679 ISPKDTNAWSGLGEAYARSGRYVSALKAFNRASILD 714


>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 274 LAEKSKRGPGLFDECCLKPCYTYDLLSY 357
           LAE  +  P  FDE C  P  +  LL Y
Sbjct: 237 LAESLELSPDAFDEFCSDPTTSIRLLRY 264


>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 288 RFLGESKSASLGVLGRQARPGAQISRRNNVCVEIRLGS 175
           RF+        GV GR + P   +SR NN+ +  R+ S
Sbjct: 205 RFVDSDFDPDSGV-GRSSSPDQMMSRNNNLNINARMTS 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,020,627
Number of Sequences: 5004
Number of extensions: 38115
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)