Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0336
         (559 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0604 + 19903654-19904598                                         30   1.1  
01_03_0271 + 14454681-14456949,14457222-14457476,14458800-144588...    29   1.9  
11_06_0510 + 24420402-24422582                                         29   2.5  
11_06_0514 - 24477720-24479915                                         28   4.4  
04_03_0096 + 11158108-11159083,11159116-11159744                       28   4.4  
03_02_0359 - 7788382-7788522,7788931-7789837,7791227-7791337,779...    28   4.4  
01_06_1202 + 35396165-35396260,35396398-35396549,35396694-353969...    28   4.4  
03_06_0403 - 33687411-33687518,33688099-33688290                       27   7.7  

>07_03_0604 + 19903654-19904598
          Length = 314

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 22/69 (31%), Positives = 33/69 (47%)
 Frame = -1

Query: 343 HRCNRA*GNIRRISQGRV*ISRREQKRESWRTGKTGQARSSNLPPK*CLRRDKIGLSSRQ 164
           HR  R   + RR+ + RV ++ R  +R   R G+ GQ R   +P    LRR +   +   
Sbjct: 96  HRARRL--HHRRVRRRRVHVAVRSSRRRHGRRGEEGQGRRPRVPAGAQLRRRR--RAHGH 151

Query: 163 CHSRVSCVR 137
            H +V  VR
Sbjct: 152 GHGQVRAVR 160


>01_03_0271 + 14454681-14456949,14457222-14457476,14458800-14458864,
            14459053-14459171,14459270-14459324
          Length = 920

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
 Frame = +1

Query: 70   DVHDKE--LKIEENPRVYCGRHLANARMILCYDTV---EKRAQSYLDANIISAGDLSSWP 234
            +VHD +  LK+  N RV+CG H+        +DT    +    S L+   ++A    S  
Sbjct: 814  EVHDPQIPLKLAPNQRVFCGLHMEIVLEAYMFDTETLDDDEVVSNLNCRPMAARSAISIV 873

Query: 235  GLSSQYAKTRAFALAEKSKRG 297
             L+  Y   R   +    K G
Sbjct: 874  ALTLNYKMARKNRMQNHGKGG 894


>11_06_0510 + 24420402-24422582
          Length = 726

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 251 YWEDRPGQELKSPAEIMFAS 192
           YW+ RP   L SPA IMF +
Sbjct: 130 YWKSRPSMRLMSPAIIMFVA 149


>11_06_0514 - 24477720-24479915
          Length = 731

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 251 YWEDRPGQELKSPAEIMFAS 192
           YW+ RPG  L  PA IMF +
Sbjct: 130 YWKSRPGVRLMIPAIIMFVA 149


>04_03_0096 + 11158108-11159083,11159116-11159744
          Length = 534

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 94  IEENPRVYCGRHLANARMILCYDTVEKRAQSYLDANIISAGDLS 225
           ++  P V+ GRH    R +     ++    SY D N++ + DLS
Sbjct: 168 VDSEPPVFPGRHYELPRSLYSCVALQTLCLSYCDLNLLESIDLS 211


>03_02_0359 -
           7788382-7788522,7788931-7789837,7791227-7791337,
           7791437-7791507,7791582-7791659,7792564-7792770,
           7792867-7793046,7793249-7793471,7794133-7794453,
           7794538-7795109
          Length = 936

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 228 LAWPVFPVRQDSRFCSRREI*TRPWLIRRML 320
           L W +F    DS+FC R++  T P ++++ L
Sbjct: 287 LNWCIFQSMFDSKFCVRKDFLTSPAVLKKRL 317


>01_06_1202 +
           35396165-35396260,35396398-35396549,35396694-35396938,
           35397044-35398350
          Length = 599

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 2/115 (1%)
 Frame = +1

Query: 4   SLSTNTTMFLLYFLIVVALVSADVHDKELKIEENP-RVYCGRH-LANARMILCYDTVEKR 177
           S S++  +FLL   ++  L  A+VH  E  ++E P +  C  H +      L   T+E R
Sbjct: 3   SSSSSRLLFLLSCSVLALLAGAEVHHHEFIVQETPVKRLCKTHNVITVNGQLPGPTLEVR 62

Query: 178 AQSYLDANIISAGDLSSWPGLSSQYAKTRAFALAEKSKRGPGLFDECCLKPCYTY 342
               +  N+++    +    ++  +   R F        GP    +C +KP  +Y
Sbjct: 63  EGDTVVINVVNHAQYN----VTIHWHGIRQFRTGWAD--GPEFVTQCPIKPGGSY 111


>03_06_0403 - 33687411-33687518,33688099-33688290
          Length = 99

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 202 IISAGDLSSWPGLSSQYAKTRAFALAEKSKR--GPGLFDECCLKPCYTYDLL 351
           ++ AG +    G  S+  + +   L ++++R  G GL+  C L+PC   D L
Sbjct: 10  MVVAGAIMGCGGNESESDREQPPGLQDETRRDAGLGLWTACALRPCLPVDRL 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,830,002
Number of Sequences: 37544
Number of extensions: 251883
Number of successful extensions: 636
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)