Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0336
         (559 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21009| Best HMM Match : Insulin (HMM E-Value=7.5e-06)               29   3.4  
SB_18415| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_10135| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                 28   5.9  

>SB_21009| Best HMM Match : Insulin (HMM E-Value=7.5e-06)
          Length = 122

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
 Frame = +1

Query: 118 CGRHLANARMILCYD---TVEKRAQSYLDANIISAGDLSSWPGLSSQYAKTRAFALAEKS 288
           CG  +++A  I+CY    T  +R  +  D +I+ + D +      +Q  K  +       
Sbjct: 48  CGDQISDAWTIICYGGGVTARQRQINRRDLSIVQSADEARQFNSKTQRGKRSSIYT---- 103

Query: 289 KRGPGLFDECCLKPCYTYDLLSYC 360
                + +ECC++ C   ++  YC
Sbjct: 104 -----ITEECCVEGCKQEEIREYC 122


>SB_18415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 623

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 34  LYFLIVVALVSADVHDKELKIEENPRVYCGR 126
           L F+IV       V  KE+++E+ P  YCGR
Sbjct: 7   LLFIIVTLSAVHQVLGKEVELEKCPGQYCGR 37


>SB_10135| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
 Frame = +1

Query: 310 DECC----LKPCYTYDLLSYC*TIQFV 378
           D CC    L PCYTY LL  C T + +
Sbjct: 163 DSCCTYRFLDPCYTYRLLDPCCTYRLL 189


>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 305

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 136 WPNDVRNRPEDFPQFSTLCRGRQHSPAPQRSGNTA 32
           W N    RP     FS+L + ++ +P PQ   +TA
Sbjct: 51  WRNASERRPSGRGFFSSLFKKKKQAPTPQTQASTA 85


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,018,760
Number of Sequences: 59808
Number of extensions: 291266
Number of successful extensions: 724
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)