Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0336
         (559 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81506-4|CAB04131.1|  191|Caenorhabditis elegans Hypothetical pr...    31   0.43 
Z66515-2|CAA91353.1|  543|Caenorhabditis elegans Hypothetical pr...    28   5.2  
S66757-1|AAB28819.1|  581|Caenorhabditis elegans Egl-43 protein.       28   5.2  
Z68104-7|CAI79159.1| 1086|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z68104-4|CAA92116.1| 1107|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z68104-3|CAA92115.1| 1119|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AF232770-1|AAF37866.1| 1107|Caenorhabditis elegans SLO-2 potassi...    27   9.1  
AF173828-1|AAD51350.1| 1119|Caenorhabditis elegans putative pota...    27   9.1  

>Z81506-4|CAB04131.1|  191|Caenorhabditis elegans Hypothetical
           protein F16H6.5 protein.
          Length = 191

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +1

Query: 79  DKELKIEENPRVYCGRHLANARMILCYDTVEKRAQSYLDANIISAGDL 222
           DK+ KI E  RV C      AR  +  + V K    Y+D+N    GDL
Sbjct: 116 DKKGKIPEGGRVKCAGTETGARSNVKCEEVAKEVNEYIDSNKDKFGDL 163


>Z66515-2|CAA91353.1|  543|Caenorhabditis elegans Hypothetical
           protein R53.3a protein.
          Length = 543

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 160 HSRVSCVRWPNDVRNRPEDFPQFSTLCRGRQ-HS 62
           HS + C   P      P+ + QFS LCR R+ HS
Sbjct: 177 HSHIHCSLKPFRCHLCPKSYTQFSNLCRHRRVHS 210


>S66757-1|AAB28819.1|  581|Caenorhabditis elegans Egl-43 protein.
          Length = 581

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 160 HSRVSCVRWPNDVRNRPEDFPQFSTLCRGRQ-HS 62
           HS + C   P      P+ + QFS LCR R+ HS
Sbjct: 177 HSHIHCSLKPFRCHLCPKSYTQFSNLCRHRRVHS 210


>Z68104-7|CAI79159.1| 1086|Caenorhabditis elegans Hypothetical
           protein F08B12.3c protein.
          Length = 1086

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 145 CVRWPNDVRNRPEDFPQFSTLCRGRQ 68
           C+R  ND R+ P+DFP FS    G+Q
Sbjct: 62  CIRVVNDERSYPDDFP-FSEEEAGKQ 86


>Z68104-4|CAA92116.1| 1107|Caenorhabditis elegans Hypothetical
           protein F08B12.3b protein.
          Length = 1107

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 145 CVRWPNDVRNRPEDFPQFSTLCRGRQ 68
           C+R  ND R+ P+DFP FS    G+Q
Sbjct: 83  CIRVVNDERSYPDDFP-FSEEEAGKQ 107


>Z68104-3|CAA92115.1| 1119|Caenorhabditis elegans Hypothetical
           protein F08B12.3a protein.
          Length = 1119

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 145 CVRWPNDVRNRPEDFPQFSTLCRGRQ 68
           C+R  ND R+ P+DFP FS    G+Q
Sbjct: 83  CIRVVNDERSYPDDFP-FSEEEAGKQ 107


>AF232770-1|AAF37866.1| 1107|Caenorhabditis elegans SLO-2 potassium
           channel protein.
          Length = 1107

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 145 CVRWPNDVRNRPEDFPQFSTLCRGRQ 68
           C+R  ND R+ P+DFP FS    G+Q
Sbjct: 83  CIRVVNDERSYPDDFP-FSEEEAGKQ 107


>AF173828-1|AAD51350.1| 1119|Caenorhabditis elegans putative
           potassium channel Slo-2 protein.
          Length = 1119

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 145 CVRWPNDVRNRPEDFPQFSTLCRGRQ 68
           C+R  ND R+ P+DFP FS    G+Q
Sbjct: 83  CIRVVNDERSYPDDFP-FSEEEAGKQ 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,163,362
Number of Sequences: 27780
Number of extensions: 214387
Number of successful extensions: 570
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)