Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0336
         (559 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   3.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.4  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 49  VVALVSADVHDKELKIEENPRVYCGRHLANARMILC 156
           +  ++  +V DK +K E+N  +   R L     +LC
Sbjct: 269 IPTVLDRNVIDKWIKTEDNESLNAARMLIRQEGLLC 304


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 78  VDVSTHQRHNDQEIQQKHRGIR 13
           +DV T Q   D   ++KHR IR
Sbjct: 615 IDVKTVQVIEDAAQKKKHRAIR 636


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -1

Query: 85   LCRGRQHSPAPQRSGNTAETSWY 17
            LCR  + +P P+ + +++E   Y
Sbjct: 1332 LCRNSRRTPVPRLAQDSSEDESY 1354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,782
Number of Sequences: 438
Number of extensions: 2697
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)