Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0336
         (559 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62010.1 68416.m06964 expressed protein                             29   2.8  
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein...    29   2.8  
At3g04810.1 68416.m00520 protein kinase, putative similar to LST...    28   4.9  
At1g14780.1 68414.m01767 expressed protein                             27   6.4  
At3g50000.1 68416.m05467 casein kinase II alpha chain 2 identica...    27   8.5  
At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1) n...    27   8.5  
At3g10440.1 68416.m01252 hypothetical protein                          27   8.5  
At3g05470.1 68416.m00599 formin homology 2 domain-containing pro...    27   8.5  

>At3g62010.1 68416.m06964 expressed protein
          Length = 1254

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -3

Query: 278  ARAKARVLAYWEDRPGQELKSPAEIMFA 195
            A  ++RV+ YWE+   + +K+PAE+  A
Sbjct: 1018 ASNQSRVIGYWENIQPENVKTPAEVYAA 1045


>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 119

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 277 REQKRESWRTGKTGQARSSNLPPK*CLRRDKIGLSSRQCH 158
           R+  RE  R       R ++  P+ C +  K+G  +R CH
Sbjct: 11  RDNDRERTRASYNNDRRRNDYDPRACYKCGKLGHFARSCH 50


>At3g04810.1 68416.m00520 protein kinase, putative similar to
           LSTK-1-like kinase [Lycopersicon esculentum]
           GI:15637110; contains Pfam profile: PF00069 Eukaryotic
           protein kinase domain
          Length = 606

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 17/55 (30%), Positives = 20/55 (36%)
 Frame = -1

Query: 187 KIGLSSRQCHSRVSCVRWPNDVRNRPEDFPQFSTLCRGRQHSPAPQRSGNTAETS 23
           KI L      S V   +WP     R   FP+      G+ HS  P R     E S
Sbjct: 264 KIHLKVNDPGSNVLPAQWPESESARRNSFPEQRRRPAGKSHSFGPSRFRGNLEDS 318


>At1g14780.1 68414.m01767 expressed protein
          Length = 627

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 133 PNDVRNRPEDFPQFSTLCRGRQHSP 59
           P    N+   F   S LCRG QHSP
Sbjct: 568 PVPANNKIVKFVDLSQLCRGPQHSP 592


>At3g50000.1 68416.m05467 casein kinase II alpha chain 2 identical
           to casein kinase II, alpha chain 2 (CK II) [Arabidopsis
           thaliana] SWISS-PROT:Q08466
          Length = 403

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 163 TVEKRAQSYLDANIISAGDLSSWPGLSSQYAKTRAFALAEKSKRG 297
           TV  +A+ Y D N+I   D   +  L+ Q+ +   + +  K  RG
Sbjct: 69  TVMSKARVYTDVNVIRPKDYWDYESLNVQWGEQDDYEVVRKVGRG 113


>At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1) nearly
            identical to retinoblastoma-related protein [Arabidopsis
            thaliana] GI:8777927; contains Pfam profiles: PF01858
            retinoblastoma-associated protein A domain, PF01857
            retinoblastoma-associated protein B domain
          Length = 1013

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
 Frame = -2

Query: 222  QISRRNNVCVEIRLGSLLDSVIAE----YHACVGQMTSA 118
            ++S  +NV V    GS +D++I+     Y+ACVG+ T A
Sbjct: 901  KVSAVHNVYVSPLRGSKMDALISHSTKSYYACVGESTHA 939


>At3g10440.1 68416.m01252 hypothetical protein
          Length = 556

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -1

Query: 130 NDVRNRPEDFPQFSTLCRGRQHSPAPQRSGNTAET 26
           ND  N   D  Q    C GRQ S +  R  +  ET
Sbjct: 235 NDAENHINDNVQSKRYCAGRQSSSSKTREASQTET 269


>At3g05470.1 68416.m00599 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 884

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +3

Query: 117 LRTSFGQRTHDTLL*HCREESPILSRRKHYFGGRFELLAWPV 242
           LR    QRTH         E P + RRKH  GG F+ +  PV
Sbjct: 128 LRRPLPQRTHPL-------EQPEIQRRKHEKGGTFKKILVPV 162


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,474,258
Number of Sequences: 28952
Number of extensions: 199329
Number of successful extensions: 493
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)