Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0334
         (506 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29066| Best HMM Match : No HMM Matches (HMM E-Value=.)             237   4e-63
SB_1026| Best HMM Match : PDZ (HMM E-Value=9.7e-08)                    28   5.1  
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  

>SB_29066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score =  237 bits (580), Expect = 4e-63
 Identities = 109/137 (79%), Positives = 122/137 (89%)
 Frame = +1

Query: 1   ERIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAP 180
           +R FRKFTYRGVDLDQLLD+ +EQLMEL+          GLKRKP+AL+K+LR+AKKEA 
Sbjct: 13  KRTFRKFTYRGVDLDQLLDLSHEQLMELVCCRQRRRFTRGLKRKPLALMKRLRKAKKEAA 72

Query: 181 PNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKH 360
           P EKPE+VKTHLRNMIIVPEM+GS+VG+YNGKTF QVEIKPEMIGHYLGEFS+TYKPVKH
Sbjct: 73  PMEKPEVVKTHLRNMIIVPEMIGSVVGVYNGKTFTQVEIKPEMIGHYLGEFSITYKPVKH 132

Query: 361 GRPGIGATHSSRFIPLK 411
           GRPGIGATHSSRFIPLK
Sbjct: 133 GRPGIGATHSSRFIPLK 149


>SB_1026| Best HMM Match : PDZ (HMM E-Value=9.7e-08)
          Length = 924

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 16/62 (25%), Positives = 35/62 (56%)
 Frame = -3

Query: 333 ELSEVMADHLRLDFNLVKSFSVVNADN*TDHLGNDDHVSQVSLHDLWLLIRRSLFLGATQ 154
           +LSE++     LDF+   + SV++ D+ T    N+ H S  ++ +L  +   ++ LG+ +
Sbjct: 769 DLSELIVPPPMLDFDDGDASSVLSTDSFTTSHTNNTHNSTTTVDELLQVCWSAVLLGSVE 828

Query: 153 LL 148
           ++
Sbjct: 829 VV 830


>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3235

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 292  EIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIP 405
            ++KP++  +  G ++V Y P K GR  I   +  R +P
Sbjct: 1714 DLKPDVKDNGDGTYTVAYVPDKPGRYNIDVKYGDRRVP 1751


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,440,665
Number of Sequences: 59808
Number of extensions: 245395
Number of successful extensions: 561
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)