Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0334
(506 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY070991-1|AAL48613.1| 148|Drosophila melanogaster RE08270p pro... 249 2e-66
AE013599-2306|AAM68504.1| 147|Drosophila melanogaster CG8332-PB... 249 2e-66
AE013599-2305|AAF57984.1| 148|Drosophila melanogaster CG8332-PA... 249 2e-66
AY058318-1|AAL13547.1| 872|Drosophila melanogaster GH08353p pro... 31 1.2
AE014296-3271|AAF49077.2| 872|Drosophila melanogaster CG14183-P... 31 1.2
AY119656-1|AAM50310.1| 460|Drosophila melanogaster SD02418p pro... 28 8.3
AJ010073-1|CAB45234.1| 614|Drosophila melanogaster XRCC1 protei... 28 8.3
AF132142-1|AAD33589.1| 614|Drosophila melanogaster DNA repair p... 28 8.3
AE014298-727|AAF46025.1| 614|Drosophila melanogaster CG4208-PA ... 28 8.3
AE014296-1211|AAF50597.1| 460|Drosophila melanogaster CG8616-PA... 28 8.3
>AY070991-1|AAL48613.1| 148|Drosophila melanogaster RE08270p
protein.
Length = 148
Score = 249 bits (609), Expect = 2e-66
Identities = 113/137 (82%), Positives = 123/137 (89%)
Frame = +1
Query: 1 ERIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAP 180
+R F+KFTYRGVDLDQLLDMPN QL+ELMH GLKRKPMAL+KKLR+AKKEAP
Sbjct: 12 KRTFKKFTYRGVDLDQLLDMPNNQLVELMHSRARRRFSRGLKRKPMALIKKLRKAKKEAP 71
Query: 181 PNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKH 360
PNEKPEIVKTHLRNMIIVPEM GSI+G+YNGK F QVE+KPEMIGHYLGEF++TYKPVKH
Sbjct: 72 PNEKPEIVKTHLRNMIIVPEMTGSIIGVYNGKDFGQVEVKPEMIGHYLGEFALTYKPVKH 131
Query: 361 GRPGIGATHSSRFIPLK 411
GRPGIGATHSSRFIPLK
Sbjct: 132 GRPGIGATHSSRFIPLK 148
>AE013599-2306|AAM68504.1| 147|Drosophila melanogaster CG8332-PB,
isoform B protein.
Length = 147
Score = 249 bits (609), Expect = 2e-66
Identities = 113/137 (82%), Positives = 123/137 (89%)
Frame = +1
Query: 1 ERIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAP 180
+R F+KFTYRGVDLDQLLDMPN QL+ELMH GLKRKPMAL+KKLR+AKKEAP
Sbjct: 11 KRTFKKFTYRGVDLDQLLDMPNNQLVELMHSRARRRFSRGLKRKPMALIKKLRKAKKEAP 70
Query: 181 PNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKH 360
PNEKPEIVKTHLRNMIIVPEM GSI+G+YNGK F QVE+KPEMIGHYLGEF++TYKPVKH
Sbjct: 71 PNEKPEIVKTHLRNMIIVPEMTGSIIGVYNGKDFGQVEVKPEMIGHYLGEFALTYKPVKH 130
Query: 361 GRPGIGATHSSRFIPLK 411
GRPGIGATHSSRFIPLK
Sbjct: 131 GRPGIGATHSSRFIPLK 147
>AE013599-2305|AAF57984.1| 148|Drosophila melanogaster CG8332-PA,
isoform A protein.
Length = 148
Score = 249 bits (609), Expect = 2e-66
Identities = 113/137 (82%), Positives = 123/137 (89%)
Frame = +1
Query: 1 ERIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAP 180
+R F+KFTYRGVDLDQLLDMPN QL+ELMH GLKRKPMAL+KKLR+AKKEAP
Sbjct: 12 KRTFKKFTYRGVDLDQLLDMPNNQLVELMHSRARRRFSRGLKRKPMALIKKLRKAKKEAP 71
Query: 181 PNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKH 360
PNEKPEIVKTHLRNMIIVPEM GSI+G+YNGK F QVE+KPEMIGHYLGEF++TYKPVKH
Sbjct: 72 PNEKPEIVKTHLRNMIIVPEMTGSIIGVYNGKDFGQVEVKPEMIGHYLGEFALTYKPVKH 131
Query: 361 GRPGIGATHSSRFIPLK 411
GRPGIGATHSSRFIPLK
Sbjct: 132 GRPGIGATHSSRFIPLK 148
>AY058318-1|AAL13547.1| 872|Drosophila melanogaster GH08353p
protein.
Length = 872
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 142 LVKKLRRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYN 270
L+KK R KK PP EK K + ++ E+V + IY+
Sbjct: 20 LIKKQNRLKKIEPPEEKAVSYKIYAELYVLYVELVNKLSFIYH 62
>AE014296-3271|AAF49077.2| 872|Drosophila melanogaster CG14183-PA
protein.
Length = 872
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 142 LVKKLRRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYN 270
L+KK R KK PP EK K + ++ E+V + IY+
Sbjct: 20 LIKKQNRLKKIEPPEEKAVSYKIYAELYVLYVELVNKLSFIYH 62
>AY119656-1|AAM50310.1| 460|Drosophila melanogaster SD02418p
protein.
Length = 460
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -3
Query: 240 LGNDDHV-SQVSLHDLWLLIRRSLFLGATQLLDQCHWFTFKTTSEPPAR 97
L ++H+ +Q+ H WLL+ S FL W +++ PPA+
Sbjct: 201 LTGEEHIFAQLHSHFSWLLLAGSRFLTEHVTFGNLPWLPPQSSGRPPAQ 249
>AJ010073-1|CAB45234.1| 614|Drosophila melanogaster XRCC1 protein
protein.
Length = 614
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 147 QEAASRQERGSSE*EARDREDSLEKHDHRSRD 242
+E ++ER S+ E + R KHDHRS D
Sbjct: 349 KEQLRKEERSHSK-EEKSRRKEKSKHDHRSSD 379
>AF132142-1|AAD33589.1| 614|Drosophila melanogaster DNA repair
protein XRCC1 protein.
Length = 614
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 147 QEAASRQERGSSE*EARDREDSLEKHDHRSRD 242
+E ++ER S+ E + R KHDHRS D
Sbjct: 349 KEQLRKEERSHSK-EEKSRRKEKSKHDHRSSD 379
>AE014298-727|AAF46025.1| 614|Drosophila melanogaster CG4208-PA
protein.
Length = 614
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 147 QEAASRQERGSSE*EARDREDSLEKHDHRSRD 242
+E ++ER S+ E + R KHDHRS D
Sbjct: 349 KEQLRKEERSHSK-EEKSRRKEKSKHDHRSSD 379
>AE014296-1211|AAF50597.1| 460|Drosophila melanogaster CG8616-PA
protein.
Length = 460
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -3
Query: 240 LGNDDHV-SQVSLHDLWLLIRRSLFLGATQLLDQCHWFTFKTTSEPPAR 97
L ++H+ +Q+ H WLL+ S FL W +++ PPA+
Sbjct: 201 LTGEEHIFAQLHSHFSWLLLAGSRFLTEHVTFGNLPWLPPQSSGRPPAQ 249
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,614,246
Number of Sequences: 53049
Number of extensions: 370680
Number of successful extensions: 1140
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1825511424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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