Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0334
(506 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D) ribo... 218 2e-57
At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Stro... 218 2e-57
At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B) ribo... 217 3e-57
At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C) ribo... 213 8e-56
At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E) 211 2e-55
At5g63070.1 68418.m07914 40S ribosomal protein S15, putative 161 2e-40
At1g33850.1 68414.m04194 40S ribosomal protein S15, putative sim... 62 2e-10
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 47 6e-06
At3g22380.1 68416.m02825 expressed protein 29 1.8
At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1 ... 29 2.4
At3g09270.1 68416.m01101 glutathione S-transferase, putative sim... 27 7.3
At3g50590.1 68416.m05533 transducin family protein / WD-40 repea... 27 9.6
At1g66980.1 68414.m07616 protein kinase family protein / glycero... 27 9.6
>At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D)
ribosomal protein S15 - Arabidopsis thaliana,
EMBL:Z23161
Length = 152
Score = 218 bits (533), Expect = 2e-57
Identities = 98/137 (71%), Positives = 115/137 (83%)
Frame = +1
Query: 1 ERIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAP 180
+R F+KF ++GVDLD LLDM + L++L GL RKPMAL+KKLR+AK+EAP
Sbjct: 16 KRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAP 75
Query: 181 PNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKH 360
EKPE V+THLRNMIIVPEM+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKH
Sbjct: 76 AGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKH 135
Query: 361 GRPGIGATHSSRFIPLK 411
GRPG+GATHSSRFIPLK
Sbjct: 136 GRPGVGATHSSRFIPLK 152
>At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Strong
similarity to Oryza 40S ribosomal protein S15. ESTs
gb|R29788,gb|ATTS0365 come from this gene
Length = 152
Score = 218 bits (533), Expect = 2e-57
Identities = 98/137 (71%), Positives = 115/137 (83%)
Frame = +1
Query: 1 ERIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAP 180
+R F+KF ++GVDLD LLDM + L++L GL RKPMAL+KKLR+AK+EAP
Sbjct: 16 KRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAP 75
Query: 181 PNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKH 360
EKPE V+THLRNMIIVPEM+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKH
Sbjct: 76 QGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKH 135
Query: 361 GRPGIGATHSSRFIPLK 411
GRPG+GATHSSRFIPLK
Sbjct: 136 GRPGVGATHSSRFIPLK 152
>At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B)
ribosomal protein S15 - Arabidopsis thaliana,
EMBL:Z23161
Length = 152
Score = 217 bits (531), Expect = 3e-57
Identities = 95/137 (69%), Positives = 116/137 (84%)
Frame = +1
Query: 1 ERIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAP 180
+R F+KF+++GVDLD LLDMP + L+EL GL RKPMAL+KKLR+AK +AP
Sbjct: 16 KRTFKKFSFKGVDLDALLDMPTDDLVELFPSRIRRRMSRGLTRKPMALIKKLRKAKLDAP 75
Query: 181 PNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKH 360
EKPE+V+THLRNM+I+PEM+GSI+G+YNGKTFNQ+EIKPEMIGHYL EFS+TYKPV+H
Sbjct: 76 AGEKPEVVRTHLRNMVIMPEMIGSIIGVYNGKTFNQIEIKPEMIGHYLAEFSITYKPVRH 135
Query: 361 GRPGIGATHSSRFIPLK 411
G+PG GATHSSRFIPLK
Sbjct: 136 GKPGHGATHSSRFIPLK 152
>At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C)
ribosomal protein S15 - Arabidopsis thaliana,
EMBL:Z23161
Length = 150
Score = 213 bits (519), Expect = 8e-56
Identities = 96/137 (70%), Positives = 114/137 (83%)
Frame = +1
Query: 1 ERIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAP 180
+R F+KF++RGVDLD LLDM + L++L GL RKPMAL+KKLR+AK EAP
Sbjct: 14 KRTFKKFSFRGVDLDALLDMSTDDLVKLFPSRIRRRFSRGLTRKPMALIKKLRKAKIEAP 73
Query: 181 PNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKH 360
EKP V+THLRNMIIVPEM+GS++G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKH
Sbjct: 74 AGEKPAAVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKH 133
Query: 361 GRPGIGATHSSRFIPLK 411
GRPG+GAT+SSRFIPLK
Sbjct: 134 GRPGVGATNSSRFIPLK 150
>At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E)
Length = 149
Score = 211 bits (515), Expect = 2e-55
Identities = 97/137 (70%), Positives = 113/137 (82%)
Frame = +1
Query: 1 ERIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAP 180
+R F+KF++RGVDLD LLDM E L++ GL RKPMAL+KKLR+AK EAP
Sbjct: 13 KRTFKKFSFRGVDLDALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMALIKKLRKAKMEAP 72
Query: 181 PNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKH 360
EKP V+THLRNMIIVPEM+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKH
Sbjct: 73 AGEKPASVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKH 132
Query: 361 GRPGIGATHSSRFIPLK 411
GRPG+GAT+SSRFIPLK
Sbjct: 133 GRPGVGATNSSRFIPLK 149
>At5g63070.1 68418.m07914 40S ribosomal protein S15, putative
Length = 160
Score = 161 bits (392), Expect = 2e-40
Identities = 80/143 (55%), Positives = 102/143 (71%), Gaps = 6/143 (4%)
Frame = +1
Query: 1 ERIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAP 180
+R F+KF++RG ++D LL M N L +L + GLK++P+ L+KKLRRAKKEA
Sbjct: 18 KRTFKKFSFRGFNVDALLKMSNVDLAKLFNARVRRRFYRGLKKQPLILIKKLRRAKKEAS 77
Query: 181 PNEK--PEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPV 354
K PE+VKTHLRNMIIVPEM+GS+VG++NGK FN++ IKPEMIGHYL EFS+T K V
Sbjct: 78 DENKMKPEVVKTHLRNMIIVPEMIGSVVGVHNGKKFNEIVIKPEMIGHYLAEFSMTCKKV 137
Query: 355 KHGRPGIGA----THSSRFIPLK 411
H RP I S+RFIPL+
Sbjct: 138 NHHRPRICGCCCFRRSTRFIPLR 160
>At1g33850.1 68414.m04194 40S ribosomal protein S15, putative
similar to SP|Q08112 40S ribosomal protein S15
{Arabidopsis thaliana}
Length = 70
Score = 62.5 bits (145), Expect = 2e-10
Identities = 30/57 (52%), Positives = 38/57 (66%)
Frame = +1
Query: 1 ERIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 171
+RIF+KF++RGVDLD LLDM E L++ G RKPMAL+KKLR+A K
Sbjct: 13 KRIFKKFSFRGVDLDALLDMSTEDLVKHFSSRIRRRFSRGFTRKPMALIKKLRKAVK 69
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 47.2 bits (107), Expect = 6e-06
Identities = 23/50 (46%), Positives = 29/50 (58%)
Frame = +1
Query: 217 RNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGR 366
R I+PE V S V IYNGKT + +I +GH GEF+ T K KH +
Sbjct: 161 RRSTILPEYVDSAVRIYNGKTHVRCKITEGKVGHKFGEFAFTRKVKKHAK 210
>At3g22380.1 68416.m02825 expressed protein
Length = 1550
Score = 29.1 bits (62), Expect = 1.8
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +3
Query: 150 EAASRQERGSSE*EARDREDSLEKHDHRSRD---GRFNCRHLQRK 275
EAA ++RG S + RDRE ++ R RD R N R +R+
Sbjct: 43 EAARLRDRGGSNKKDRDRERDRDRERERERDRERDRLNSRSKRRR 87
>At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1
significant, 2 weak WD-40 repeats (PF00400); similar to
transducin beta-like 1 protein.(SP:O60907) [Homo
sapiens]
Length = 467
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 295 IKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSR 396
+KPE+ G Y E Y P+K PG ++ SSR
Sbjct: 20 MKPELPGFYYDEEKNRYFPIKGPIPGAKSSSSSR 53
>At3g09270.1 68416.m01101 glutathione S-transferase, putative
similar to glutathione transferase GB:CAA71784 [Glycine
max]
Length = 224
Score = 27.1 bits (57), Expect = 7.3
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = +1
Query: 148 KKLRRAKKEA---PPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGH 318
+K+ A K+A P +E+ + VK + + + +G + + G+T V+I + IG+
Sbjct: 107 EKVMLAVKKACWGPESEREKEVKEAYEGLKCLEKELGDKL-FFGGETIGFVDIAADFIGY 165
Query: 319 YLGEF 333
+LG F
Sbjct: 166 WLGIF 170
>At3g50590.1 68416.m05533 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400); some
similarity to s-tomosyn isoform (GI:4689231)[Rattus
norvegicus]; contains non-consensus AT-AC splice sites at
intron 18
Length = 1606
Score = 26.6 bits (56), Expect = 9.6
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +1
Query: 232 VPEMVGSIVGIYNGKT---FNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFI 402
+P +V +G+Y G N VEIK + + G S+ KPV + A SS +
Sbjct: 1040 IPSIVADHIGVYLGCVKGRVNVVEIKEDSLVSKPGGLSLLGKPVSDKPLALPAGESSSMM 1099
Query: 403 PLK 411
L+
Sbjct: 1100 GLE 1102
>At1g66980.1 68414.m07616 protein kinase family protein /
glycerophosphoryl diester phosphodiesterase family
protein similar to leaf rust resistance kinase Lr10
GI:1680685 from [Triticum aestivum]; contains Pfam
profiles PF03009: Glycerophosphoryl diester
phosphodiesterase family, PF00069: Protein kinase domain
Length = 1109
Score = 26.6 bits (56), Expect = 9.6
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +1
Query: 205 KTHLRN-MIIVPEMVGSIVGIYN-GKTFNQVEIKPEMIGHYLGEFSVTYKP 351
+THLRN IIVPE + S+ GI+ T+++++ I + E ++ P
Sbjct: 428 QTHLRNRSIIVPE-ISSVAGIFTFSLTWHEIQSLTPAISNPFRENGMSRNP 477
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,394,871
Number of Sequences: 28952
Number of extensions: 175246
Number of successful extensions: 471
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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