Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0332
(759 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0194 + 28327328-28327376,28327699-28327742,28327852-283279... 310 1e-84
01_06_0109 - 26526691-26526775,26526894-26527019,26527228-265273... 303 1e-82
01_01_1031 + 8169505-8169553,8169831-8169905,8170395-8170438,817... 264 5e-71
04_04_0457 + 25359486-25359571,25360690-25360782,25361561-253616... 126 1e-46
10_01_0316 + 3479574-3482679,3482766-3483127 30 1.7
10_01_0318 + 3493913-3496976,3497064-3497392 29 5.3
12_01_0496 + 3939731-3939758,3940459-3942773 28 7.0
10_03_0002 - 6858257-6861205 28 7.0
05_05_0377 - 24498664-24500215,24500306-24500643 28 9.3
>05_07_0194 +
28327328-28327376,28327699-28327742,28327852-28327961,
28328250-28328287,28328371-28328448,28328527-28328580,
28328663-28328764,28329152-28329237,28329327-28329430,
28329542-28329610,28329689-28329804,28329949-28329983,
28330152-28330294,28330473-28330598,28330700-28330784
Length = 412
Score = 310 bits (760), Expect = 1e-84
Identities = 140/212 (66%), Positives = 168/212 (79%)
Frame = +1
Query: 124 RVVAAKPVVEMDGDEMTRIIWAKIKERLIFPYVKVDCLYFDLGLPHRDATDDQVTIDSAH 303
++ A P+VEMDGDEMTR+ W IK++LIFP++++D YFDLGLP+RD TDD+VT+++A
Sbjct: 5 KIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPYRDQTDDKVTVEAAE 64
Query: 304 AILKHNVGIKCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTVFREPILCQSIPRVVP 483
A LK+NV IKCATITPDE RV+EF LK MW SPNGTIRNIL GTVFREPI+C++IPR+VP
Sbjct: 65 ATLKYNVAIKCATITPDEARVKEFSLKSMWKSPNGTIRNILNGTVFREPIICKNIPRLVP 124
Query: 484 GWTKPIVIGRHAHGDQYKAQDFVVPKPGKVELVYTTQDGTTERRVLYDFKTPGVAMGMYN 663
GWTKPI IGRHA GDQY+A D V+ PGK++LVY +D E V GVA MYN
Sbjct: 125 GWTKPICIGRHAFGDQYRATDAVIKGPGKLKLVYEGKDEEIELEVFNFTGAGGVAQSMYN 184
Query: 664 TDESIRSFAHSSFQVALQKKWPLYLSTKNTIL 759
TDESIRSFA +S A +KKWPLYLSTKNTIL
Sbjct: 185 TDESIRSFAEASMATAYEKKWPLYLSTKNTIL 216
>01_06_0109 -
26526691-26526775,26526894-26527019,26527228-26527370,
26527521-26527555,26527676-26527791,26527868-26527936,
26528070-26528173,26528253-26528338,26528429-26528530,
26528609-26528662,26528763-26528840,26528936-26528973,
26529235-26529344,26529463-26529506,26530232-26530280
Length = 412
Score = 303 bits (743), Expect = 1e-82
Identities = 135/213 (63%), Positives = 170/213 (79%)
Frame = +1
Query: 121 KRVVAAKPVVEMDGDEMTRIIWAKIKERLIFPYVKVDCLYFDLGLPHRDATDDQVTIDSA 300
+++ A P+VEMDGDEMTRI W IK++LIFP++ +D Y+DLG+ HRDATDD+VT+++A
Sbjct: 4 EKIKVANPIVEMDGDEMTRIFWQSIKDKLIFPFLDLDIKYYDLGVLHRDATDDKVTVEAA 63
Query: 301 HAILKHNVGIKCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTVFREPILCQSIPRVV 480
A LK+NV IKCATITPDE RV+EF LK+MW SPNGTIRNI+ GTVFREPI+C+++PR+V
Sbjct: 64 EATLKYNVAIKCATITPDEARVKEFNLKQMWKSPNGTIRNIINGTVFREPIICKNVPRLV 123
Query: 481 PGWTKPIVIGRHAHGDQYKAQDFVVPKPGKVELVYTTQDGTTERRVLYDFKTPGVAMGMY 660
PGWTKPI IGRHA GDQY+A D V+ PGK++LV+ +D + V GVA+ MY
Sbjct: 124 PGWTKPICIGRHAFGDQYRATDAVLKGPGKLKLVFEGKDEQIDLEVFNFTGAGGVALSMY 183
Query: 661 NTDESIRSFAHSSFQVALQKKWPLYLSTKNTIL 759
NTDESIR+FA +S A +KKWPLYLSTKNTIL
Sbjct: 184 NTDESIRAFAEASMTTAYEKKWPLYLSTKNTIL 216
>01_01_1031 +
8169505-8169553,8169831-8169905,8170395-8170438,
8170633-8170742,8170960-8170997,8171055-8171186,
8171298-8171351,8171424-8171525,8172679-8172764,
8172870-8172973,8173056-8173124,8173156-8173209,
8173210-8173325,8173420-8173454,8173637-8173779,
8174105-8174227,8174305-8174398
Length = 475
Score = 264 bits (647), Expect = 5e-71
Identities = 131/223 (58%), Positives = 159/223 (71%), Gaps = 18/223 (8%)
Frame = +1
Query: 145 VVEMDGDEMTRIIWAKIKERLIFPYVKVDCLYFDLGLPHRDATDDQVTIDSAHAILKHNV 324
V GDEMTR+IW IK++LIFP++ +D Y+DLGLP+RDAT D+VTI+SA A LK+NV
Sbjct: 37 VTRNSGDEMTRVIWKWIKDKLIFPFLDLDIKYYDLGLPNRDATGDKVTIESAEATLKYNV 96
Query: 325 GIKCATITP------------------DEQRVEEFKLKKMWLSPNGTIRNILGGTVFREP 450
IKCATITP DE RV+EF L MW SPNGTIRNIL GTVFREP
Sbjct: 97 AIKCATITPVLDTQFKFDFGRTIHEPTDEGRVKEFNLSAMWKSPNGTIRNILNGTVFREP 156
Query: 451 ILCQSIPRVVPGWTKPIVIGRHAHGDQYKAQDFVVPKPGKVELVYTTQDGTTERRVLYDF 630
I+C++IPR+VPGW KPI IGRHA GDQY+A D V+ PGK++LV+ ++ E V
Sbjct: 157 IICKNIPRLVPGWIKPICIGRHAFGDQYRATDTVIKGPGKLKLVFDGREEQIELDVFNFT 216
Query: 631 KTPGVAMGMYNTDESIRSFAHSSFQVALQKKWPLYLSTKNTIL 759
GVA+ MYNTDESI +FA +S +A QK+WPLYLSTKNTIL
Sbjct: 217 GAGGVALSMYNTDESIWAFAEASMNMAYQKRWPLYLSTKNTIL 259
>04_04_0457 +
25359486-25359571,25360690-25360782,25361561-25361622,
25361758-25361816,25363624-25363733,25364795-25364829,
25365469-25365546,25365952-25366005,25366277-25366362,
25366468-25366571,25366986-25367054,25367135-25367250,
25367387-25367421,25367512-25367654,25367808-25367930,
25368463-25368556
Length = 448
Score = 126 bits (303), Expect(2) = 1e-46
Identities = 62/101 (61%), Positives = 77/101 (76%), Gaps = 2/101 (1%)
Frame = +1
Query: 205 LIFPYVKVDCLYFDLGLPHRDATDDQVTIDSAHAILKHNVGIKCATITPDEQRVEEFKLK 384
LIFPY+++D YFDLGL +RDATDD+VT++SA A L T+T DE RV+EFKLK
Sbjct: 101 LIFPYLELDVKYFDLGLLNRDATDDKVTVESAEATLDLYSNSFFMTLT-DETRVKEFKLK 159
Query: 385 KMWLSPNGTIRNILGGTVFREPILCQSIPRV--VPGWTKPI 501
MW SPNGTIRNIL GTVFREPILC+++PR+ VP +P+
Sbjct: 160 SMWRSPNGTIRNILNGTVFREPILCKNVPRILSVPDGAEPV 200
Score = 79.0 bits (186), Expect(2) = 1e-46
Identities = 35/47 (74%), Positives = 40/47 (85%)
Frame = +1
Query: 619 LYDFKTPGVAMGMYNTDESIRSFAHSSFQVALQKKWPLYLSTKNTIL 759
+Y+FK PGVA+ MYN DESIR+FA SS +AL KKWPLYLSTKNTIL
Sbjct: 204 VYNFKGPGVALSMYNVDESIRAFAESSMAMALSKKWPLYLSTKNTIL 250
>10_01_0316 + 3479574-3482679,3482766-3483127
Length = 1155
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +1
Query: 409 TIRNILGGTVFREPILCQSIPRVVPGWTKPIVIGRHAHGDQYKAQDFVVPKPGKVELVYT 588
++RN+ E + + I R W++ VIGR HG Y+ + V K V+ V
Sbjct: 842 SMRNLDSTEELPEDLTYEDILRATDNWSEKYVIGRGRHGTVYRT-ELAVGKQWAVKTVDL 900
Query: 589 TQ 594
+Q
Sbjct: 901 SQ 902
>10_01_0318 + 3493913-3496976,3497064-3497392
Length = 1130
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 409 TIRNILGGTVFREPILCQSIPRVVPGWTKPIVIGRHAHGDQYKAQ 543
++RN+ E + + I R W++ VIGR HG Y+ +
Sbjct: 828 SVRNMDSTEELPEELTYEDILRGTDNWSEKYVIGRGRHGTVYRTE 872
>12_01_0496 + 3939731-3939758,3940459-3942773
Length = 780
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -3
Query: 754 WYSSWTGIEAIFSVKLLENWNGQRTESIRRYCTCP 650
WY+SW + L WNG + + C+CP
Sbjct: 259 WYNSWMAFSQPCEIHGLCGWNGICAYTPKIGCSCP 293
>10_03_0002 - 6858257-6861205
Length = 982
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +1
Query: 529 QYKAQDFVVPKPGKVELVYTTQDGTTERRVLYDFKTPGVAMGMYNTDESIRSFAHSSFQV 708
++ + DFV GK+ L+ + D + E R+ F P A + T SI ++ S ++
Sbjct: 19 RFGSLDFVTNNFGKISLLDSESDQSGENRISVPFGLPNAAESYFKT-ISIEFASNHSGEI 77
Query: 709 ALQKKWP 729
A P
Sbjct: 78 ASSPTTP 84
>05_05_0377 - 24498664-24500215,24500306-24500643
Length = 629
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -2
Query: 404 FGLSHIFFNLNSSTLCSSGVIVAHLMPTLCF 312
+ S +F LN + +C + L+PT+C+
Sbjct: 343 YASSECYFGLNLNPMCKPSEVAYTLIPTMCY 373
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,497,400
Number of Sequences: 37544
Number of extensions: 455245
Number of successful extensions: 1081
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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