Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0332
         (759 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)                     273   9e-74
SB_26442| Best HMM Match : Iso_dh (HMM E-Value=3.6e-37)               248   3e-66
SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.77 
SB_26728| Best HMM Match : Disintegrin (HMM E-Value=1.9e-23)           30   1.8  
SB_18045| Best HMM Match : rve (HMM E-Value=0.25)                      30   2.3  
SB_52148| Best HMM Match : EGF (HMM E-Value=0)                         29   4.1  
SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)             28   9.5  
SB_8123| Best HMM Match : Tfb2 (HMM E-Value=0.00019)                   28   9.5  
SB_6680| Best HMM Match : Astacin (HMM E-Value=0)                      28   9.5  

>SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)
          Length = 644

 Score =  273 bits (670), Expect = 9e-74
 Identities = 129/197 (65%), Positives = 156/197 (79%), Gaps = 1/197 (0%)
 Frame = +1

Query: 172 TRIIWAKIKERLIFPYVKVDCLYFDLGLPHRDATDDQVTIDSAHAILKHNVGIKCATITP 351
           T +I AK  + LI PY+ +D  YFDLGL HRDAT+D+VT+++A AI KH+VGIKCATITP
Sbjct: 10  TGLIAAKCTQ-LISPYLDLDIKYFDLGLEHRDATNDKVTVEAAEAIRKHHVGIKCATITP 68

Query: 352 DEQRVEEFKLKKMWLSPNGTIRNILGGTVFREPILCQSIPRVVPGWTKPIVIGRHAHGDQ 531
           DE RVEEFKLKKMW SPNGTIRNILGGTVFR PI+C+++PR+VPGW KPIVIGRHA GDQ
Sbjct: 69  DEARVEEFKLKKMWKSPNGTIRNILGGTVFRAPIICKTVPRLVPGWEKPIVIGRHAFGDQ 128

Query: 532 YKAQDFVVPKPGKVELVYTTQDGTTERRVLYDFK-TPGVAMGMYNTDESIRSFAHSSFQV 708
           Y+A+DF V  PG  E+ +T + G      +++F  T GV MGMYNTDE+IR FAHS  Q 
Sbjct: 129 YRARDFAVNGPGSFEISFTPESGGKLTTEVFEFTGTGGVMMGMYNTDEAIRDFAHSCMQY 188

Query: 709 ALQKKWPLYLSTKNTIL 759
           A+ K+ PLY+STKNTIL
Sbjct: 189 AIHKQVPLYMSTKNTIL 205


>SB_26442| Best HMM Match : Iso_dh (HMM E-Value=3.6e-37)
          Length = 296

 Score =  248 bits (608), Expect = 3e-66
 Identities = 118/168 (70%), Positives = 140/168 (83%), Gaps = 2/168 (1%)
 Frame = +1

Query: 241 FDLGLPHRDATDDQVTIDSAHAILKHNVGIKCATITPDEQRVEEFKLKKMWLSPNGTIRN 420
           +DL + +RDAT+DQVTID+A AI + +VGIKCATITPDE+RVEEFKLKKMW SPNGTIRN
Sbjct: 6   YDLSIENRDATNDQVTIDAAAAIKQCHVGIKCATITPDEKRVEEFKLKKMWKSPNGTIRN 65

Query: 421 ILGGTVFREPILCQSIPRVVPGWTKPIVIGRHAHGDQYKAQDFVVPKPGKVELVYTTQDG 600
           ILGGTVFRE I+C++IPR+V  WTKPI+IGRHAH DQYKA DFVVP PGKVE+VY+  DG
Sbjct: 66  ILGGTVFREAIICKNIPRLVSPWTKPIIIGRHAHADQYKATDFVVPGPGKVEIVYSPADG 125

Query: 601 TTE-RRVLYDFKT-PGVAMGMYNTDESIRSFAHSSFQVALQKKWPLYL 738
               +  + +FK   GV MGM+NTD SIR+FAHSSFQ AL KK+PLY+
Sbjct: 126 GEPIKYTVNEFKDGGGVTMGMFNTDVSIRAFAHSSFQYALDKKYPLYM 173


>SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1378

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = +1

Query: 250 GLPHRDATDDQVTIDSAHAILKHNVGIKCATITPDEQRVEEFKLKKMWLSPNGTIRNILG 429
           G+ HRD   D + +     +   + G  CATITP++ +         W++P    R   G
Sbjct: 336 GVIHRDIKSDNILLGMDGQVKLTDFGF-CATITPEQNKRSTMVGTPYWMAPEVVTRKQYG 394

Query: 430 GTV 438
             V
Sbjct: 395 PRV 397


>SB_26728| Best HMM Match : Disintegrin (HMM E-Value=1.9e-23)
          Length = 1531

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
 Frame = +1

Query: 76  CVNQFASLTRNYGTAKRVVAAKPVVEMDG----DEMTRIIWAKIKE-RLIFPYVKVDCLY 240
           C +  A+ TR  G + + V     +  +G    +E+  ++W+   + RL   ++K DC+ 
Sbjct: 400 CSDADATFTRTSGKSLKHVRTGYCIHPNGGYPGNEVELLLWSGCDDQRLELWFMKQDCV- 458

Query: 241 FDLGLPHRDATDDQVTIDS 297
             LGL + D  D Q+T  S
Sbjct: 459 LPLGLRNGDIPDSQITASS 477


>SB_18045| Best HMM Match : rve (HMM E-Value=0.25)
          Length = 364

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 85  QFASLTRNYGTAKRVVAAKPVVEMDGDEM 171
           Q   +TRN    K+V+   PV+E+D DE+
Sbjct: 285 QGKGITRNSSVFKKVILGTPVIEIDDDEI 313


>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1055

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +1

Query: 532 YKAQDFVVPKPGKVELVYTTQDGTTERRVLYDFKTPGVAMGMYNTDESIRSFAHSSFQ 705
           YKA+D  +PK     L   T++G  + R  Y  + P    G +N  + I S     F+
Sbjct: 95  YKAEDCSIPKREAPVLYGVTREGLCDLRYYYCKRFPLTGKGFFNNRKLICSVRQILFR 152


>SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)
          Length = 520

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/72 (25%), Positives = 34/72 (47%)
 Frame = +1

Query: 352 DEQRVEEFKLKKMWLSPNGTIRNILGGTVFREPILCQSIPRVVPGWTKPIVIGRHAHGDQ 531
           D + +E++KL+K      GTI N  G  +  E +L      ++P   +  +  ++AH  +
Sbjct: 295 DPKELEDYKLEK------GTITNYPGAKMVEENLLEAECDILIPAANEKQITKKNAHRIK 348

Query: 532 YKAQDFVVPKPG 567
            K +  +   PG
Sbjct: 349 AKEKGTITNYPG 360


>SB_8123| Best HMM Match : Tfb2 (HMM E-Value=0.00019)
          Length = 448

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -2

Query: 494 FVQPGTTLGIL*HNIGSRNTVPP-KMLRIVPFGLSHIFFNLNSS 366
           F  P T L +  +NIGS NT+   ++ R VP G+ H  + +N++
Sbjct: 38  FCHPATCLTVFRYNIGSLNTLKQLRIWREVPSGV-HKRYEMNAT 80


>SB_6680| Best HMM Match : Astacin (HMM E-Value=0)
          Length = 637

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +1

Query: 367 EEFKLKKMWLSPNGTIRNILGGTVFREPILCQSIPRVVPGWTK 495
           E ++ K++ L P G +  ++G  + R P   + I + + GW +
Sbjct: 76  EPWERKQVQLWPGGVVPYLIGEDLKRRPSFVKKIEQAMEGWER 118


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,215,880
Number of Sequences: 59808
Number of extensions: 534663
Number of successful extensions: 1191
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)