Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0332
         (759 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81479-7|CAB03943.1|  435|Caenorhabditis elegans Hypothetical pr...   321   4e-88
Z68343-3|CAA92778.1|  412|Caenorhabditis elegans Hypothetical pr...   320   9e-88
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    35   0.072
Z81576-1|CAB04643.2|  312|Caenorhabditis elegans Hypothetical pr...    33   0.22 
AF077542-12|AAC26293.1|  169|Caenorhabditis elegans Hypothetical...    31   0.89 
AF022978-10|AAG24180.2|  275|Caenorhabditis elegans Hypothetical...    30   1.6  
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    28   8.3  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>Z81479-7|CAB03943.1|  435|Caenorhabditis elegans Hypothetical
           protein C34F6.8 protein.
          Length = 435

 Score =  321 bits (788), Expect = 4e-88
 Identities = 148/227 (65%), Positives = 180/227 (79%), Gaps = 6/227 (2%)
 Frame = +1

Query: 97  LTRNYGTA-----KRVVAAKPVVEMDGDEMTRIIWAKIKERLIFPYVKVDCLYFDLGLPH 261
           L RN  TA     +++    PVV++DGDEMTRIIW +IK +LI PY+ +D  Y+DLGL +
Sbjct: 12  LARNVATAATQERQKIKVDNPVVDLDGDEMTRIIWKEIKNKLILPYLDLDIKYYDLGLEY 71

Query: 262 RDATDDQVTIDSAHAILKHNVGIKCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTVF 441
           RD T+DQVTID+AHAIL+H+VGIKCATITPDE R++EF LKKMWLSPNGTIRNILGGTVF
Sbjct: 72  RDETNDQVTIDAAHAILEHSVGIKCATITPDEARIKEFNLKKMWLSPNGTIRNILGGTVF 131

Query: 442 REPILCQSIPRVVPGWTKPIVIGRHAHGDQYKAQDFVVPKPGKVELVYTTQDGTTERRVL 621
           REPILC++IPR+VPGWT+PI IGRHA GDQYK  D V+P    ++L+    DG+ +   +
Sbjct: 132 REPILCKNIPRLVPGWTQPITIGRHAFGDQYKCTDLVIPSGSTLQLLVNKPDGSKDVHNV 191

Query: 622 YDF-KTPGVAMGMYNTDESIRSFAHSSFQVALQKKWPLYLSTKNTIL 759
           YDF K+ GV + MYNTDESI+ FAHS FQ AL K+WPLYLSTKNTIL
Sbjct: 192 YDFKKSGGVGLAMYNTDESIKGFAHSCFQYALMKQWPLYLSTKNTIL 238


>Z68343-3|CAA92778.1|  412|Caenorhabditis elegans Hypothetical
           protein F59B8.2 protein.
          Length = 412

 Score =  320 bits (785), Expect = 9e-88
 Identities = 146/215 (67%), Positives = 179/215 (83%), Gaps = 1/215 (0%)
 Frame = +1

Query: 118 AKRVVAAKPVVEMDGDEMTRIIWAKIKERLIFPYVKVDCLYFDLGLPHRDATDDQVTIDS 297
           A + +    +VEM GDEMTRIIW  IKE+LI PYV ++  +FDLG+ HRDATDDQVTID+
Sbjct: 2   AAQKIQGGDIVEMQGDEMTRIIWDLIKEKLILPYVDLNVHFFDLGIEHRDATDDQVTIDA 61

Query: 298 AHAILKHNVGIKCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTVFREPILCQSIPRV 477
           A+A LK+NV +KCATITPDE RVEEFKLKKMW SPNGTIRNILGGTVFREPI+ +++PR+
Sbjct: 62  ANATLKYNVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIIVKNVPRL 121

Query: 478 VPGWTKPIVIGRHAHGDQYKAQDFVVPKPGKVELVYTTQDGT-TERRVLYDFKTPGVAMG 654
           V  W+KPI+IGRHAH DQYKA DFVVP  GK+E+ + + DGT T +  ++DFK PGV++ 
Sbjct: 122 VNTWSKPIIIGRHAHADQYKATDFVVPGAGKLEIKFVSADGTQTIQETVFDFKGPGVSLS 181

Query: 655 MYNTDESIRSFAHSSFQVALQKKWPLYLSTKNTIL 759
           MYNTD+SIR FAH+SF+ ALQ+K+PLYLSTKNTIL
Sbjct: 182 MYNTDDSIRDFAHASFKYALQRKFPLYLSTKNTIL 216


>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical
           protein F40H6.5 protein.
          Length = 1288

 Score = 34.7 bits (76), Expect = 0.072
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
 Frame = +1

Query: 7   HEQW*IHEQYRNMANTSTTKILKCVNQFASLTRNYGTA-KRVVAAKPVVEM-DGDEMTRI 180
           ++QW I     N  NT+   + KC++ F    +NYG   KR+V    ++E+ D   +T  
Sbjct: 730 YQQWTIDTVQMNYQNTNLKYLPKCISIF---QKNYGDLNKRMVNFARIMEVGDNITITGH 786

Query: 181 IWAKIKERLIFPYVKVDCLY 240
           IW    E     YV +D  Y
Sbjct: 787 IWQNASESTFNLYVGMDPKY 806


>Z81576-1|CAB04643.2|  312|Caenorhabditis elegans Hypothetical
           protein R10E8.1 protein.
          Length = 312

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +1

Query: 151 EMDGDEMTRII-WAKIKERLIFPYVKVDCLYFDLGLPHRDATDDQVTIDSAHAILKHNVG 327
           EMD D +T++  W +IK  LI  ++    L   L LP    T   +TI +   + KH +G
Sbjct: 170 EMDCDGLTKLPHWKRIKSLLIEGFIVSAPLEHFLHLPEVTITMQSITIFNLKLLKKHFLG 229

Query: 328 IK 333
           +K
Sbjct: 230 LK 231


>AF077542-12|AAC26293.1|  169|Caenorhabditis elegans Hypothetical
           protein Y57G7A.9 protein.
          Length = 169

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 274 DDQVTIDSAHAILKHNVGIKCATITPDEQRVE 369
           +DQ   +  H I K N GI+CA + P+ Q  E
Sbjct: 29  NDQYFQEVIHRICKRNEGIRCAMLAPNAQHAE 60


>AF022978-10|AAG24180.2|  275|Caenorhabditis elegans Hypothetical
           protein T01G6.10 protein.
          Length = 275

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +1

Query: 565 GKVELVYTTQDGTTERRVLYDFKTPGVAMGMYNTDESIRSFAHSSFQVALQKKWPLYLST 744
           G+ E+V +  D      VL +     V  G +NTD+S   + H +FQ+  +    +   T
Sbjct: 72  GQDEIVQSALDAFGRIDVLVNNAGANVVDGTFNTDQSTELY-HKTFQINFEAVIEMVKKT 130

Query: 745 KNTIL 759
           KN ++
Sbjct: 131 KNHLI 135


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 548  LLYRNPERLNSFTLHKMVRLRGV-YYMILKLQALLW 652
            L Y  PE + SF +++  ++    YYM+ +++AL W
Sbjct: 3113 LKYEIPEFVVSFYMYERAKMSSADYYMVDRMEALYW 3148


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 548  LLYRNPERLNSFTLHKMVRLRGV-YYMILKLQALLW 652
            L Y  PE + SF +++  ++    YYM+ +++AL W
Sbjct: 3113 LKYEIPEFVVSFYMYERAKMSSADYYMVDRMEALYW 3148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,377,383
Number of Sequences: 27780
Number of extensions: 395084
Number of successful extensions: 890
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)