Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0329
         (673 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   4.0  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   5.3  
AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esteras...    21   9.2  
AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esteras...    21   9.2  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = +1

Query: 574 NNCPQASCEHPI 609
           N CP+ +C+ P+
Sbjct: 87  NECPEPTCDEPV 98


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +2

Query: 347 LGASSADAGVQSWPGEVHPSCQNF 418
           L    A  GV+ +   VH  C NF
Sbjct: 289 LSGLKAPPGVEHFEDVVHKKCSNF 312


>AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = -2

Query: 447 YLTEYAFAGSKFWHDGWTSPGQL*TPASADDAP 349
           Y  ++ +     W +  T  G+    A ADD P
Sbjct: 417 YALKFEYRSGNSWFEHETESGRNFGAAHADDVP 449


>AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = -2

Query: 447 YLTEYAFAGSKFWHDGWTSPGQL*TPASADDAP 349
           Y  ++ +     W +  T  G+    A ADD P
Sbjct: 417 YALKFEYRSGNSWFEHETESGRNFGAAHADDVP 449


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,372
Number of Sequences: 336
Number of extensions: 3214
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)