Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0329
(673 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz... 220 2e-58
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz... 219 2e-58
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar... 48 9e-07
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom... 27 3.3
SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar... 26 5.7
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 7.5
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 9.9
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 25 9.9
SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc2... 25 9.9
>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 192
Score = 220 bits (537), Expect = 2e-58
Identities = 103/131 (78%), Positives = 116/131 (88%)
Frame = +3
Query: 48 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 227
P SKTY PRRPFE ARLD ELK+ GEYGLRNK E+WRV TL++IR+AARELLTL+E
Sbjct: 5 PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64
Query: 228 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 407
KDPKRLFEGNA++RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHH
Sbjct: 65 KDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124
Query: 408 ARILIRQRHIR 440
AR+LI QRHIR
Sbjct: 125 ARVLIFQRHIR 135
Score = 54.0 bits (124), Expect = 2e-08
Identities = 21/29 (72%), Positives = 27/29 (93%)
Frame = +2
Query: 587 KQVVNIPSFIVRLDSGKHIDFSLKSPFGG 673
KQ+VN+PSF+VRLD+ KHIDF+L SP+GG
Sbjct: 138 KQIVNVPSFVVRLDAQKHIDFALSSPYGG 166
>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 191
Score = 219 bits (536), Expect = 2e-58
Identities = 103/131 (78%), Positives = 116/131 (88%)
Frame = +3
Query: 48 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 227
P SKTY PRRPFE ARLD ELK+ GEYGLRNK E+WRV TL++IR+AARELLTL+E
Sbjct: 5 PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64
Query: 228 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 407
KDPKRLFEGNA++RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHH
Sbjct: 65 KDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124
Query: 408 ARILIRQRHIR 440
AR+LI QRHIR
Sbjct: 125 ARVLIFQRHIR 135
Score = 54.0 bits (124), Expect = 2e-08
Identities = 21/29 (72%), Positives = 27/29 (93%)
Frame = +2
Query: 587 KQVVNIPSFIVRLDSGKHIDFSLKSPFGG 673
KQ+VN+PSF+VRLD+ KHIDF+L SP+GG
Sbjct: 138 KQIVNVPSFVVRLDTQKHIDFALSSPYGG 166
>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 48.4 bits (110), Expect = 9e-07
Identities = 28/110 (25%), Positives = 49/110 (44%)
Frame = +3
Query: 111 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 290
+++ ++ Y + + E + + R+ A L L+ DP RL N LL +L +G+
Sbjct: 28 RDVMVMRRYHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGI 87
Query: 291 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 440
L K D + RRL + K +++ + A LI Q H+R
Sbjct: 88 LPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVR 137
>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +3
Query: 306 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 437
+++D L + +E FL++ TQ+ +A I + I Q H+
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKIWQNHV 175
>SPAC21E11.03c |pcr1|mts2|transcription factor
Pcr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 171
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 481 QIQAAAIRAPLLSHRICLCRIKILA*WMDF 392
Q +A +++ LL+H+ C C +KI + DF
Sbjct: 60 QQEAFRLKSQLLAHQGCQCSVKIRSVLTDF 89
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.4 bits (53), Expect = 7.5
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +2
Query: 335 D*GLLGASSADAGVQSWPGEVHPSCQNFDP 424
D GLLGA+S GVQS PG P P
Sbjct: 1521 DYGLLGAASPYKGVQS-PGYTSPFSSAMSP 1549
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.0 bits (52), Expect = 9.9
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +3
Query: 165 RVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGL 332
R++YT R+R AR+ LT LF + L+ + +L++KQ + +L L
Sbjct: 1566 RLEYTALRLRSYARKTLT-NSASQNALF---SFLKANFDVALLEQKQTETSNLLRL 1617
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +3
Query: 21 LAKMVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYT 179
++K VN FS + +R + A +D + + E RN++ +++YT
Sbjct: 470 ISKKVNCLYVEAFSSSDAVLQRIQDNAVVDSPTEELSEQAARNRKSNVKIEYT 522
>SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc22
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 391
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = -1
Query: 604 DVHNLLADNYYQTNASYYENTNCFKTLNSTKLKFKWSI 491
+ ++LL D Y + + + T+ S K K KW++
Sbjct: 171 ETYSLLLDTYIREPKEKQRHFDAILTMGSIKAKAKWAL 208
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,667,200
Number of Sequences: 5004
Number of extensions: 52286
Number of successful extensions: 146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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