Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0329
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)             239   1e-63
SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.28 
SB_5361| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.0  
SB_34026| Best HMM Match : PLDc (HMM E-Value=0.063)                    29   3.4  
SB_44438| Best HMM Match : Phosphorylase (HMM E-Value=1e-22)           29   4.5  
SB_25478| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45)               28   7.9  
SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)                 28   7.9  

>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score =  239 bits (586), Expect = 1e-63
 Identities = 116/129 (89%), Positives = 122/129 (94%)
 Frame = +3

Query: 54  VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 233
           V SKTY TPRRPFEK RL+QELKIIGEYGLRNKREVWRVK TLA+IRKAARELLTLEEKD
Sbjct: 5   VCSKTYTTPRRPFEKERLNQELKIIGEYGLRNKREVWRVKLTLAKIRKAARELLTLEEKD 64

Query: 234 PKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHAR 413
           P+RLFEGNALLRRLVRIGVLDE + KLDYVLGL+IEDFLERRLQTQVFK GLAKSIHHAR
Sbjct: 65  PRRLFEGNALLRRLVRIGVLDESRKKLDYVLGLRIEDFLERRLQTQVFKLGLAKSIHHAR 124

Query: 414 ILIRQRHIR 440
           +LIRQRHIR
Sbjct: 125 VLIRQRHIR 133



 Score = 57.6 bits (133), Expect = 9e-09
 Identities = 24/30 (80%), Positives = 28/30 (93%)
 Frame = +2

Query: 584 RKQVVNIPSFIVRLDSGKHIDFSLKSPFGG 673
           RKQ+VN+PSF+VRLDS KHIDFSL SP+GG
Sbjct: 135 RKQLVNVPSFVVRLDSQKHIDFSLNSPYGG 164


>SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +3

Query: 81  RRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 239
           +RP  K  L Q+   +G+YG   KR+   V         AARE+L +E   PK
Sbjct: 57  KRPLGKELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPK 109


>SB_5361| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1562

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = -1

Query: 592  LLADNYYQTNASYYENTNCFKTLNSTKLKFKW-SI*TKQIQAAAIRAPLLSHR 437
            L+   Y +TN   Y +  CF  L+ +K  F++ ++ T++I   A  APL+S++
Sbjct: 1092 LVLRGYGRTNPYDYPSEICFNGLHYSKYFFRYIALLTREITQDANAAPLISYQ 1144


>SB_34026| Best HMM Match : PLDc (HMM E-Value=0.063)
          Length = 499

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/73 (27%), Positives = 36/73 (49%)
 Frame = -2

Query: 345 SPQSSDQAHNRVSSVFHPVLQYEPDDVEGHYLRTISWGPSPRG*GAHEQPYGYERACI*R 166
           SP+ +D  H  VSSV    LQ   DD   H L+  ++ PS     +++  +  +     +
Sbjct: 219 SPEVADFFHELVSSVSDISLQLHKDDTT-HMLKDFAFHPSE----SNKTEFITKATERLK 273

Query: 165 AILHACCGDRTLR 127
            ++H+C G + +R
Sbjct: 274 TLVHSCSGKKAIR 286


>SB_44438| Best HMM Match : Phosphorylase (HMM E-Value=1e-22)
          Length = 398

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
 Frame = +3

Query: 189 IRKAARELLTLEEKDPKRL-------FEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDF 347
           + K  R   T  EKDPKR+       + G AL   ++ +G+  E   +  Y LGL +E+ 
Sbjct: 100 VGKWIRTQQTYYEKDPKRVYYLSLEYYMGRALSNTMINLGIQGECD-EAAYQLGLDMEEL 158

Query: 348 LERRLQTQVFKAGLAK 395
            E      +   GL +
Sbjct: 159 EEMEEDAGLGNGGLGR 174


>SB_25478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 75

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +3

Query: 195 KAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKL 314
           ++A ELL   EK+ KRL E NA L    R  V++ +++KL
Sbjct: 24  RSAAELLDKSEKERKRLSEKNAQLTINERDLVMELERLKL 63


>SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45)
          Length = 454

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +3

Query: 96  KARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 239
           K  L Q+   +G+YG   KR+   V         AARE+L +E   PK
Sbjct: 2   KELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPK 49


>SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)
          Length = 884

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +3

Query: 273 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARIL 419
           L++I   D+K M+ +Y+LGL +E   +R    +++   + K   H R L
Sbjct: 806 LLQILTQDDKNMEAEYLLGLILERQGKRLEAMKLYMDVIRKDTSHVRAL 854


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,410,709
Number of Sequences: 59808
Number of extensions: 411703
Number of successful extensions: 1038
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)