Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0329
         (673 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061396-1|AAL28944.1|  137|Drosophila melanogaster LD32106p pro...   261   5e-70
AE014296-1681|AAF50250.1|  137|Drosophila melanogaster CG3395-PB...   261   5e-70
AE014296-1680|AAN11946.1|  195|Drosophila melanogaster CG3395-PD...   261   5e-70
AE014296-1679|AAF50249.1|  195|Drosophila melanogaster CG3395-PA...   261   5e-70
X69677-1|CAB41492.1|  197|Drosophila melanogaster ribosomal prot...   165   6e-41
AY071534-1|AAL49156.1|  181|Drosophila melanogaster RE57564p pro...    40   0.003
AE013599-2494|AAF57847.2|  181|Drosophila melanogaster CG4866-PA...    40   0.003

>AY061396-1|AAL28944.1|  137|Drosophila melanogaster LD32106p
           protein.
          Length = 137

 Score =  261 bits (640), Expect = 5e-70
 Identities = 125/137 (91%), Positives = 132/137 (96%)
 Frame = +3

Query: 30  MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 209
           MVN R+PSVFSKTYVTPRRP+EKARLDQELKIIGEYGLRNKREVWRVKY LA+IRKAARE
Sbjct: 1   MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60

Query: 210 LLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGL 389
           LLTL+EKD KRLF+GNALLRRLVRIGVLDE +MKLDYVLGLKIEDFLERRLQTQVFK GL
Sbjct: 61  LLTLDEKDEKRLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGL 120

Query: 390 AKSIHHARILIRQRHIR 440
           AKSIHHAR+LIRQRHIR
Sbjct: 121 AKSIHHARVLIRQRHIR 137


>AE014296-1681|AAF50250.1|  137|Drosophila melanogaster CG3395-PB,
           isoform B protein.
          Length = 137

 Score =  261 bits (640), Expect = 5e-70
 Identities = 125/137 (91%), Positives = 132/137 (96%)
 Frame = +3

Query: 30  MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 209
           MVN R+PSVFSKTYVTPRRP+EKARLDQELKIIGEYGLRNKREVWRVKY LA+IRKAARE
Sbjct: 1   MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60

Query: 210 LLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGL 389
           LLTL+EKD KRLF+GNALLRRLVRIGVLDE +MKLDYVLGLKIEDFLERRLQTQVFK GL
Sbjct: 61  LLTLDEKDEKRLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGL 120

Query: 390 AKSIHHARILIRQRHIR 440
           AKSIHHAR+LIRQRHIR
Sbjct: 121 AKSIHHARVLIRQRHIR 137


>AE014296-1680|AAN11946.1|  195|Drosophila melanogaster CG3395-PD,
           isoform D protein.
          Length = 195

 Score =  261 bits (640), Expect = 5e-70
 Identities = 125/137 (91%), Positives = 132/137 (96%)
 Frame = +3

Query: 30  MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 209
           MVN R+PSVFSKTYVTPRRP+EKARLDQELKIIGEYGLRNKREVWRVKY LA+IRKAARE
Sbjct: 1   MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60

Query: 210 LLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGL 389
           LLTL+EKD KRLF+GNALLRRLVRIGVLDE +MKLDYVLGLKIEDFLERRLQTQVFK GL
Sbjct: 61  LLTLDEKDEKRLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGL 120

Query: 390 AKSIHHARILIRQRHIR 440
           AKSIHHAR+LIRQRHIR
Sbjct: 121 AKSIHHARVLIRQRHIR 137



 Score = 62.5 bits (145), Expect = 5e-10
 Identities = 28/30 (93%), Positives = 29/30 (96%)
 Frame = +2

Query: 584 RKQVVNIPSFIVRLDSGKHIDFSLKSPFGG 673
           RKQVVNIPSF+VRLDS KHIDFSLKSPFGG
Sbjct: 139 RKQVVNIPSFVVRLDSQKHIDFSLKSPFGG 168


>AE014296-1679|AAF50249.1|  195|Drosophila melanogaster CG3395-PA,
           isoform A protein.
          Length = 195

 Score =  261 bits (640), Expect = 5e-70
 Identities = 125/137 (91%), Positives = 132/137 (96%)
 Frame = +3

Query: 30  MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 209
           MVN R+PSVFSKTYVTPRRP+EKARLDQELKIIGEYGLRNKREVWRVKY LA+IRKAARE
Sbjct: 1   MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60

Query: 210 LLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGL 389
           LLTL+EKD KRLF+GNALLRRLVRIGVLDE +MKLDYVLGLKIEDFLERRLQTQVFK GL
Sbjct: 61  LLTLDEKDEKRLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGL 120

Query: 390 AKSIHHARILIRQRHIR 440
           AKSIHHAR+LIRQRHIR
Sbjct: 121 AKSIHHARVLIRQRHIR 137



 Score = 62.5 bits (145), Expect = 5e-10
 Identities = 28/30 (93%), Positives = 29/30 (96%)
 Frame = +2

Query: 584 RKQVVNIPSFIVRLDSGKHIDFSLKSPFGG 673
           RKQVVNIPSF+VRLDS KHIDFSLKSPFGG
Sbjct: 139 RKQVVNIPSFVVRLDSQKHIDFSLKSPFGG 168


>X69677-1|CAB41492.1|  197|Drosophila melanogaster ribosomal protein
           protein.
          Length = 197

 Score =  165 bits (400), Expect = 6e-41
 Identities = 88/134 (65%), Positives = 101/134 (75%)
 Frame = +3

Query: 30  MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 209
           MVN R+PSVFSKTYVTPRRP+EKARLDQELKIIGEYGL+  R V  VKY LA+IRK ARE
Sbjct: 1   MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLQQARSV-AVKYALAKIRKVARE 59

Query: 210 LLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGL 389
           LLTL+EKD KRLF+G +L+RRLVRIGVL +   +     G +    L         +AGL
Sbjct: 60  LLTLDEKDAKRLFQGKSLVRRLVRIGVL-KSPHEARLRAGSEDSGLLGASSADAGVQAGL 118

Query: 390 AKSIHHARILIRQR 431
           AKSIHHAR+LIRQR
Sbjct: 119 AKSIHHARVLIRQR 132


>AY071534-1|AAL49156.1|  181|Drosophila melanogaster RE57564p
           protein.
          Length = 181

 Score = 39.9 bits (89), Expect = 0.003
 Identities = 25/110 (22%), Positives = 51/110 (46%)
 Frame = +3

Query: 111 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 290
           +E KI+  + ++ + +  +       IR+ A  +  L+  +P +      LL +L  +GV
Sbjct: 28  KENKILRRFHIQKREDYTKYNKLSREIRELAERIAKLDASEPFKTEATTMLLNKLHAMGV 87

Query: 291 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 440
            ++ Q+ L+    +    F  RRL   + K  +++ +  A  LI   H+R
Sbjct: 88  SND-QLTLETAAKISASHFCRRRLPVIMVKLRMSEHLKAATDLIEHGHVR 136


>AE013599-2494|AAF57847.2|  181|Drosophila melanogaster CG4866-PA
           protein.
          Length = 181

 Score = 39.9 bits (89), Expect = 0.003
 Identities = 25/110 (22%), Positives = 51/110 (46%)
 Frame = +3

Query: 111 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 290
           +E KI+  + ++ + +  +       IR+ A  +  L+  +P +      LL +L  +GV
Sbjct: 28  KENKILRRFHIQKREDYTKYNKLSREIRELAERIAKLDASEPFKTEATTMLLNKLHAMGV 87

Query: 291 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 440
            ++ Q+ L+    +    F  RRL   + K  +++ +  A  LI   H+R
Sbjct: 88  SND-QLTLETAAKISASHFCRRRLPVIMVKLRMSEHLKAATDLIEHGHVR 136


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,322,528
Number of Sequences: 53049
Number of extensions: 595100
Number of successful extensions: 1648
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1645
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2910007350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)