Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0327
(569 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 301 3e-83
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 291 4e-80
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 260 8e-71
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 243 1e-65
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 207 8e-55
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 122 5e-29
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 99 5e-22
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 62 4e-11
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch... 29 0.36
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 29 0.63
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 0.84
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 2.6
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 26 3.4
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ... 26 3.4
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr... 25 5.9
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 25 5.9
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 25 5.9
SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al... 25 5.9
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 25 5.9
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.8
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 7.8
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 7.8
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 301 bits (740), Expect = 3e-83
Identities = 140/178 (78%), Positives = 159/178 (89%)
Frame = +2
Query: 14 VQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNA 193
VQ+DMKHWPF+V+S GKP ++V YKGE KTF PEE+SSMVL KM+ETAEAYLG V +A
Sbjct: 81 VQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISSMVLMKMRETAEAYLGGKVTDA 140
Query: 194 VITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGG 373
V+TVPAYFNDSQRQATKDAG I+GLNVLRIINEPTAAAIAYGLD+ GE NVLIFDLGG
Sbjct: 141 VVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDRSNQGESNVLIFDLGG 200
Query: 374 GTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRAL 547
GTFDVS+LTIE+GIFEVK+TAGDTHLGGEDFD+R+VNHF+QEFKRK KKD+ N RA+
Sbjct: 201 GTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDSRLVNHFIQEFKRKNKKDITGNARAV 258
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 291 bits (715), Expect = 4e-80
Identities = 136/178 (76%), Positives = 156/178 (87%)
Frame = +2
Query: 14 VQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNA 193
VQ+DMKHWPF+V+ GKP I+V +KGE KTF PEE+SSMVL KM+E+AEA+LG V +A
Sbjct: 81 VQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSMVLLKMRESAEAFLGGKVTDA 140
Query: 194 VITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGG 373
V+TVPAYFNDSQRQATKDAG I+GLNVLRIINEPTAAAIAYGLD+ E NVLIFDLGG
Sbjct: 141 VVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDRSNQHETNVLIFDLGG 200
Query: 374 GTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRAL 547
GTFDVS+LTIE+GIFEVK+TAGDTHLGGEDFD+R+VNHF QEFKRK KKD+ N RA+
Sbjct: 201 GTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDSRLVNHFAQEFKRKNKKDITGNARAV 258
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 260 bits (638), Expect = 8e-71
Identities = 123/177 (69%), Positives = 145/177 (81%)
Frame = +2
Query: 17 QADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAV 196
Q D+KHWPF+V+ + G P I+V Y GE K F +E+S+MVLTKMKE +EA L K V+ AV
Sbjct: 86 QKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISAMVLTKMKEISEAKLNKRVEKAV 145
Query: 197 ITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGG 376
ITVPAYF+DSQR ATKDAG I+GLNVLRIINEPTAAAIAYGLD K +NVLIFDLGGG
Sbjct: 146 ITVPAYFSDSQRAATKDAGAIAGLNVLRIINEPTAAAIAYGLDAKSDKPKNVLIFDLGGG 205
Query: 377 TFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRAL 547
TFDVS+L I+ G+FEV +TAGDTHLGGEDFDN +V HF+QEFKRK K D++ + RAL
Sbjct: 206 TFDVSLLKIQGGVFEVLATAGDTHLGGEDFDNALVEHFIQEFKRKQKIDISDDPRAL 262
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 243 bits (595), Expect = 1e-65
Identities = 108/179 (60%), Positives = 150/179 (83%)
Frame = +2
Query: 11 TVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQN 190
T+ D+K +PF +V+D +P ++V G+ K F PEE+S+M+L+KMK+TAEAYLGK V +
Sbjct: 113 TMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISAMILSKMKQTAEAYLGKPVTH 172
Query: 191 AVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLG 370
AV+TVPAYFND+QRQATKDAGTI+GLNV+RI+NEPTAAAIAYGLDK T E++++++DLG
Sbjct: 173 AVVTVPAYFNDAQRQATKDAGTIAGLNVIRIVNEPTAAAIAYGLDKTDT-EKHIVVYDLG 231
Query: 371 GGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRAL 547
GGTFDVS+L+I++G+FEV +T+GDTHLGGEDFDNR++N+ + + RK D+ + +A+
Sbjct: 232 GGTFDVSLLSIDNGVFEVLATSGDTHLGGEDFDNRVINYLARTYNRKNNVDVTKDLKAM 290
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 207 bits (506), Expect = 8e-55
Identities = 99/178 (55%), Positives = 130/178 (73%)
Frame = +2
Query: 14 VQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNA 193
VQ D+K P+++V + KT+ P ++ +L+KM+ETA YLGK V+NA
Sbjct: 130 VQRDIKEVPYKIVEHSNGD---AWLEARGKTYSPSQIGGFILSKMRETASTYLGKDVKNA 186
Query: 194 VITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGG 373
V+TVPAYFNDSQRQATK AG I+GLNVLR++NEPTAAA+AYGLDKK + V +FDLGG
Sbjct: 187 VVTVPAYFNDSQRQATKAAGAIAGLNVLRVVNEPTAAALAYGLDKK--NDAIVAVFDLGG 244
Query: 374 GTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRAL 547
GTFD+SIL + +G+FEV+ST GDTHLGGEDFD +V H V+ FK+ DL+ ++ A+
Sbjct: 245 GTFDISILELNNGVFEVRSTNGDTHLGGEDFDVALVRHIVETFKKNEGLDLSKDRLAV 302
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 122 bits (293), Expect = 5e-29
Identities = 64/160 (40%), Positives = 94/160 (58%), Gaps = 4/160 (2%)
Frame = +2
Query: 77 KVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGT 256
KV Y E+ F ++ + TK+K AEA L +V + VI++PA+F D QR+A +A
Sbjct: 106 KVQYLNEETAFSNIQLIAAYFTKIKAIAEAELIGSVSDVVISIPAWFTDIQRRALLEAAN 165
Query: 257 ISGLNVLRIINEPTAAAIAYGLDKKGTGE----RNVLIFDLGGGTFDVSILTIEDGIFEV 424
I+GLN LR++N+ AAA+ YG+ K E R V I D G + VSI+ G F +
Sbjct: 166 IAGLNPLRLMNDNAAAALTYGITKTDLPEPESPRRVAIVDFGHSNYSVSIVEFSRGQFHI 225
Query: 425 KSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRA 544
KST D +LG + D ++++F EFK KYK D+ +N +A
Sbjct: 226 KSTVCDRNLGSRNMDKALIDYFAAEFKEKYKIDVLSNPKA 265
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 98.7 bits (235), Expect = 5e-22
Identities = 48/152 (31%), Positives = 90/152 (59%)
Frame = +2
Query: 95 EDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNV 274
++K E S L ++ E+AE +LG V V++VP YF D+QR+A + A +GL V
Sbjct: 134 KEKILTAHEASVRHLRRLTESAEDFLGTKVNGCVMSVPVYFTDAQRKALESAANEAGLPV 193
Query: 275 LRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLG 454
L++I++P A +A ++ ++ V++ + G +VS+++++ G+ + ++ D +LG
Sbjct: 194 LQLIHDPAAVILALMYSEEVLIDKTVVVANFGATRSEVSVVSVKGGLMTILASVHDENLG 253
Query: 455 GEDFDNRMVNHFVQEFKRKYKKDLATNKRALS 550
GE + +VN F +EF++K D N R+L+
Sbjct: 254 GEQLTDVLVNFFAKEFEKKNGIDPRKNARSLA 285
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 62.5 bits (145), Expect = 4e-11
Identities = 44/165 (26%), Positives = 82/165 (49%), Gaps = 13/165 (7%)
Frame = +2
Query: 95 EDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNV 274
+++ + EE+ +M + AE + + + V+TVP +FN+ QR +A I +V
Sbjct: 131 DEENYSLEEIIAMTMEHYISLAEEMAHEKITDLVLTVPPHFNELQRSILLEAARILNKHV 190
Query: 275 LRIINEPTAAAIAYGLDKK-GTGERNVLIFDLGGGTFDVSIL---TIE-------DGIFE 421
L +I++ A AI Y L + T +I+D G G+ +++ T+E I
Sbjct: 191 LALIDDNVAVAIEYSLSRSFSTDPTYNIIYDSGSGSTSATVISFDTVEGSSLGKKQNITR 250
Query: 422 VKSTA-GDT-HLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALS 550
+++ A G T L G + + +++ F +K+ DL+ N RAL+
Sbjct: 251 IRALASGFTLKLSGNEINRKLIGFMKNSFYQKHGIDLSHNHRALA 295
>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 891
Score = 29.5 bits (63), Expect = 0.36
Identities = 36/116 (31%), Positives = 50/116 (43%), Gaps = 6/116 (5%)
Frame = -3
Query: 543 ALLLVARSFLYFLLNSWTKWLTMRLSKSSPP-KWVSP--AVDFTSKIPSSMVRMDTSKVP 373
AL+ +A LY LLN K S SSPP SP FT S+ M +S P
Sbjct: 679 ALITIALDSLYVLLNMRAKSTPNSTSFSSPPTPHRSPFSGQAFTGMGLSNYSLMSSSSFP 738
Query: 372 PPRSK-ISTFRSPVPFL-SRP*AIAAAVGSLMIRRTFKP-EMVPASFVACL*ESLK 214
+S S F S P + ++ +IA+ M+ P + +PA C SL+
Sbjct: 739 SAQSSPTSPFLSGTPSIANQSSSIASLQFGRMVDSLVGPVQPIPAQTTGCSVHSLQ 794
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 28.7 bits (61), Expect = 0.63
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -3
Query: 468 SKSSPPKWVSPAVDFTSKIPSSMVRMDTSKVPPPRSK 358
+KSSP K VSP V SK +S V + S +P +K
Sbjct: 203 NKSSPVKHVSPNVKNNSKKTASSVNSNHSSIPSSITK 239
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 0.84
Identities = 17/49 (34%), Positives = 19/49 (38%)
Frame = -3
Query: 468 SKSSPPKWVSPAVDFTSKIPSSMVRMDTSKVPPPRSKISTFRSPVPFLS 322
+ S PP P + IP PPPRS ST R P P S
Sbjct: 333 NSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSS 381
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.6 bits (56), Expect = 2.6
Identities = 34/153 (22%), Positives = 62/153 (40%)
Frame = -3
Query: 468 SKSSPPKWVSPAVDFTSKIPSSMVRMDTSKVPPPRSKISTFRSPVPFLSRP*AIAAAVGS 289
S SS P S + DF+S I + + +S +P S +S+ S S P + + ++ S
Sbjct: 541 SSSSIP--TSSSSDFSSSITTISSGISSSSIPSTFSSVSSILSSST--SSPSSTSLSISS 596
Query: 288 LMIRRTFKPEMVPASFVACL*ESLKYAGTVITAFCTVLPR*ASAVSFIFVSTMELTSSGK 109
TF S + I++ T+L + S + +S+ + S
Sbjct: 597 SSTSSTFSSAST---------SSPSSISSSISSSSTILSSPTPSTSSLMISSSSIISGSS 647
Query: 108 KVLSSPLYATLILGLPPSLTTSKGQCFMSACTV 10
+LSS + + + SL+T S+ T+
Sbjct: 648 SILSSSIST---IPISSSLSTYSSSVIPSSSTL 677
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 26.2 bits (55), Expect = 3.4
Identities = 19/57 (33%), Positives = 22/57 (38%)
Frame = +2
Query: 320 LDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF 490
LDK G+ I GG T SIL +GI VK E F+N F
Sbjct: 48 LDKAPAGKVKDYIASHGGHTVITSILIANNGIAAVKEIRSIRKWAYETFNNERAIKF 104
>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 384
Score = 26.2 bits (55), Expect = 3.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 504 LNSWTKWLTMRLSKSSPPKWVSPAVDF 424
LN K++ SK P W+SPA DF
Sbjct: 256 LNYKNKFVNAWQSKVGPLPWMSPATDF 282
>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 455
Score = 25.4 bits (53), Expect = 5.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 64 ASITDNLERPVLHVGLHSSY 5
A + NL RP+ H LHSS+
Sbjct: 408 APVIRNLPRPIYHQDLHSSH 427
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 25.4 bits (53), Expect = 5.9
Identities = 18/72 (25%), Positives = 29/72 (40%)
Frame = -3
Query: 456 PPKWVSPAVDFTSKIPSSMVRMDTSKVPPPRSKISTFRSPVPFLSRP*AIAAAVGSLMIR 277
PP S K P V VP P S S R P+L I+ + G+L+++
Sbjct: 416 PPSIASSPESKRRKCPKKFVARPP--VPHPTSLYSQIRIGCPYLKPKLVISKSFGTLIVK 473
Query: 276 RTFKPEMVPASF 241
+ ++ +F
Sbjct: 474 NHNQLSLLKCTF 485
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 25.4 bits (53), Expect = 5.9
Identities = 28/138 (20%), Positives = 61/138 (44%), Gaps = 3/138 (2%)
Frame = +2
Query: 125 SSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAA 304
SS+ + ++KE + T ++ + ++N +Q + DA + L + +E A
Sbjct: 15 SSLKVPEIKEKEKINAINTYEDVANSEDEFYN-AQDKILFDADNGEQADELELSDEELVA 73
Query: 305 AIAYGLDKKGTGERNVLIFD-LGGGTFDVSILTIEDGIFEVKS--TAGDTHLGGEDFDNR 475
+ ++ G E N+ + L G D E+ +++ K + ++ GG+D+DN
Sbjct: 74 LESSSDEEDGNAEENLSENEELSGKKKDA---VNEEELYDNKGWGRSAKSYYGGDDYDNE 130
Query: 476 MVNHFVQEFKRKYKKDLA 529
+ EF + ++ A
Sbjct: 131 DYSEEDDEFDARMEEQEA 148
>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 25.4 bits (53), Expect = 5.9
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 122 VSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATK 244
++ ++ K A LGK + FN+SQ+QAT+
Sbjct: 57 INEPIVYKSSNNAYIVLGKVTVEDMAAQARAFNESQKQATE 97
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.4 bits (53), Expect = 5.9
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 372 AVPSTCPSLPSRMVSSR*NPPPATPTW 452
++PST P++PS +S + PP T ++
Sbjct: 299 SIPSTIPTIPSAYSASVSSQPPLTHSY 325
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 25.0 bits (52), Expect = 7.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -3
Query: 531 VARSFLYFLLNSWTKWLTMRLSKS 460
V + ++ FL SW KWL + + +S
Sbjct: 137 VEQKWIQFLHKSWMKWLHISIQES 160
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 25.0 bits (52), Expect = 7.8
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 377 TFDVSILTIEDGIFEVKSTAGDTHL 451
TF I DG+FE GD+HL
Sbjct: 48 TFPTEIWETRDGLFEEPVGKGDSHL 72
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 25.0 bits (52), Expect = 7.8
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 543 ALLLVARSFLYFLLNSWTKWLTMRLSKSSPPKWVSPAVDFTS 418
AL+ VAR F + LLN+ + T+R+ + V + FTS
Sbjct: 726 ALVKVARDFGFTLLNTKNRRYTIRIRGENKNFRVLDIIPFTS 767
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,441,267
Number of Sequences: 5004
Number of extensions: 51174
Number of successful extensions: 212
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -