Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0327
(569 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 309 1e-84
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 306 7e-84
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 251 3e-67
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 247 6e-66
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 142 2e-34
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 139 1e-33
SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049) 103 8e-23
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 91 4e-19
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.) 86 2e-17
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07) 54 8e-08
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_30668| Best HMM Match : NIF3 (HMM E-Value=5.1) 31 0.50
SB_27085| Best HMM Match : Filamin (HMM E-Value=1.5) 31 0.88
SB_41920| Best HMM Match : Filamin (HMM E-Value=0.00015) 30 1.5
SB_48208| Best HMM Match : rve (HMM E-Value=2e-20) 29 2.0
SB_43375| Best HMM Match : Pneumo_att_G (HMM E-Value=3.6) 29 2.0
SB_33576| Best HMM Match : Pentaxin (HMM E-Value=1.3e-06) 29 2.0
SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85) 29 2.0
SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_50521| Best HMM Match : MFS_1 (HMM E-Value=0.0026) 29 2.7
SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_46921| Best HMM Match : Endomucin (HMM E-Value=6.3) 28 6.2
SB_45916| Best HMM Match : Cadherin (HMM E-Value=0) 28 6.2
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_30476| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_53811| Best HMM Match : Mab-21 (HMM E-Value=0.003) 27 8.2
SB_14895| Best HMM Match : CcmE (HMM E-Value=5.3) 27 8.2
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 309 bits (758), Expect = 1e-84
Identities = 146/181 (80%), Positives = 165/181 (91%), Gaps = 1/181 (0%)
Frame = +2
Query: 8 ATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQ 187
ATVQ+DMK WPF+++SD KPKI+V YKGE KTF EE+SSMVL KMKETAEAYLG+ V
Sbjct: 81 ATVQSDMKLWPFKIISDNNKPKIQVEYKGERKTFAAEEISSMVLGKMKETAEAYLGQKVT 140
Query: 188 NAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDL 367
+AVITVPAYFNDSQRQATKDAGTI+GLNVLR+INEPTAAA+AYGLDK +GE+NVLIFDL
Sbjct: 141 SAVITVPAYFNDSQRQATKDAGTIAGLNVLRVINEPTAAALAYGLDKSLSGEKNVLIFDL 200
Query: 368 GGGTFDVSILTIEDG-IFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRA 544
GGGTFDVSILTI+DG +FEVKSTAGDTHLGGEDFDNR+VNHFV EFKRKYKKD++ N RA
Sbjct: 201 GGGTFDVSILTIDDGSLFEVKSTAGDTHLGGEDFDNRLVNHFVAEFKRKYKKDMSKNSRA 260
Query: 545 L 547
+
Sbjct: 261 M 261
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 306 bits (752), Expect = 7e-84
Identities = 142/178 (79%), Positives = 162/178 (91%)
Frame = +2
Query: 14 VQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNA 193
V DM HWPF V+ +G +PKI+V +KGE K+FFPEE+SSMVLTKMKETAEAYLG V +A
Sbjct: 83 VARDMTHWPFHVIREGERPKIQVEFKGEKKSFFPEEISSMVLTKMKETAEAYLGAKVTDA 142
Query: 194 VITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGG 373
V+TVPAYF+DSQRQATKDAGTI+GLNVLRIINEPTAAAIAYGLDKK ERNVLI+DLGG
Sbjct: 143 VVTVPAYFHDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGVERNVLIYDLGG 202
Query: 374 GTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRAL 547
GTFDVS+LTIEDGIFEVKSTAGDTHLGGEDFDN+MV+HFV++FK+KYKKD+ NKRA+
Sbjct: 203 GTFDVSVLTIEDGIFEVKSTAGDTHLGGEDFDNKMVDHFVKQFKQKYKKDITPNKRAM 260
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 251 bits (614), Expect = 3e-67
Identities = 117/179 (65%), Positives = 149/179 (83%)
Frame = +2
Query: 11 TVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQN 190
+VQ D+K +PF+VV KP ++V K E KTF EE+S+MVLTKMKETAEAYLGK V +
Sbjct: 780 SVQNDLKFFPFKVVDKNKKPHVQVKVKDEIKTFAAEEISAMVLTKMKETAEAYLGKKVTH 839
Query: 191 AVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLG 370
AV+TVPAYFND+QRQATKDAG I+GL V+RIINEPTAAAIAYG+DKK GE+N+L+FDLG
Sbjct: 840 AVVTVPAYFNDAQRQATKDAGAIAGLTVMRIINEPTAAAIAYGMDKK-EGEKNILVFDLG 898
Query: 371 GGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRAL 547
GGTFDVS+LTI++G+FEV +T GDTHLGGEDFD ++ HF++ +K+K K++ + RA+
Sbjct: 899 GGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQNVMEHFIKLYKKKKGKNIRKDNRAV 957
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 247 bits (604), Expect = 6e-66
Identities = 119/143 (83%), Positives = 130/143 (90%)
Frame = +2
Query: 119 EVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPT 298
++SSMVL KMKETAEAYLG V +AV+TVPAYFNDSQRQATKDAG ISGLNVLRIINEPT
Sbjct: 211 QISSMVLNKMKETAEAYLGCKVTDAVVTVPAYFNDSQRQATKDAGVISGLNVLRIINEPT 270
Query: 299 AAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRM 478
AAAIAYGLDKK ERNVLIFDLGGGTFDVS+L+IEDGIFEVKST GDTHLGGEDFDN M
Sbjct: 271 AAAIAYGLDKKVGQERNVLIFDLGGGTFDVSVLSIEDGIFEVKSTHGDTHLGGEDFDNNM 330
Query: 479 VNHFVQEFKRKYKKDLATNKRAL 547
V+ FV++FK+KYKKD+ NKRAL
Sbjct: 331 VDFFVKQFKQKYKKDITPNKRAL 353
Score = 118 bits (284), Expect = 3e-27
Identities = 55/70 (78%), Positives = 62/70 (88%)
Frame = +2
Query: 44 EVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFND 223
EVV++ G+PK+KV YKGE KTFF EE+SSMVL KMKETAEAYLG V +AV+TVPAYFND
Sbjct: 118 EVVNEAGRPKVKVEYKGETKTFFAEEISSMVLNKMKETAEAYLGCKVTDAVVTVPAYFND 177
Query: 224 SQRQATKDAG 253
SQRQATKDAG
Sbjct: 178 SQRQATKDAG 187
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 142 bits (344), Expect = 2e-34
Identities = 73/171 (42%), Positives = 106/171 (61%), Gaps = 1/171 (0%)
Frame = +2
Query: 29 KHWPFEVVSDG-GKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITV 205
K + F V +D G V KG PEE+ V+ K++ AE L TV AV++V
Sbjct: 117 KLYQFRVTTDKRGNAGFLVGKKGNFTVITPEEIGGYVIKKLRTMAERNLTTTVTKAVMSV 176
Query: 206 PAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFD 385
PA F+ QR AT A +++G+ VLR+INEPTAAA+AYGL KK G NV++ DLGGGT D
Sbjct: 177 PAEFDIKQRNATVKAASLAGITVLRVINEPTAAALAYGLHKK-EGVANVMVVDLGGGTLD 235
Query: 386 VSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNK 538
VS+L I+ G+F + AG+ LGG+DF+ R + + +Q +++ + L ++
Sbjct: 236 VSLLNIQGGMFVTMAMAGNNRLGGQDFNARFMQYLLQLIHKRFNRQLTCSE 286
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 139 bits (337), Expect = 1e-33
Identities = 74/181 (40%), Positives = 110/181 (60%), Gaps = 4/181 (2%)
Frame = +2
Query: 14 VQADMKHWPFEVVS-DGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQN 190
VQ ++ H P++VV I+V Y G+ + F PE+V +M+ T++K TAE L V +
Sbjct: 139 VQKEIPHLPYKVVELPNDSIGIQVQYLGKQEVFSPEQVMAMLFTRLKTTAEIALKTKVTD 198
Query: 191 AVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKG---TGERNVLIF 361
VI+VP+Y+ D QR+ DA +GLN LR++N+ TA ++AYG+ K+ RNV+
Sbjct: 199 CVISVPSYYTDRQRRCMLDASATAGLNCLRLMNDTTAVSLAYGIYKQDLPTDKPRNVVFV 258
Query: 362 DLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKR 541
D+G + V I G +V STA + +LGG DFD +V HF QEFK KYK D+ ++ +
Sbjct: 259 DIGHSSLQVCITAFLKGQLKVLSTAVEPNLGGRDFDYVLVEHFAQEFKTKYKIDVHSSIK 318
Query: 542 A 544
A
Sbjct: 319 A 319
>SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)
Length = 179
Score = 103 bits (248), Expect = 8e-23
Identities = 63/118 (53%), Positives = 78/118 (66%), Gaps = 26/118 (22%)
Frame = +2
Query: 74 IKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAG 253
I V GE ++F PE++S++VL ++K AEA+LG+ V+ AVITVPA+FND+QRQATKDAG
Sbjct: 2 IAVEVCGEKRSFAPEQISAVVLEQLKADAEAFLGQAVKRAVITVPAHFNDAQRQATKDAG 61
Query: 254 TISGLN------------------------VLRIINEPTAAAIAYGLDKK--GTGERN 349
TI+GL+ VLRIINEPTAAAIAYGLDK G ERN
Sbjct: 62 TIAGLDVLSRTASERPPSRFRRRRPHGRSRVLRIINEPTAAAIAYGLDKARGGKAERN 119
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 91.5 bits (217), Expect = 4e-19
Identities = 59/179 (32%), Positives = 98/179 (54%), Gaps = 18/179 (10%)
Frame = +2
Query: 68 PKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKD 247
P +K Y+ D TF PEE+ M+L + E + +++ V+TVP +FN ++R+A
Sbjct: 68 PHVK-NYQQSDVTFTPEELMGMILNHSRFIGEQFADHPIKDVVLTVPPFFNQAERRALLR 126
Query: 248 AGTISGLNVLRIINEPTAAAIAYGLDKK----GTGERNVLIFDLGGGTFDVSIL------ 397
A + GLNVL+I+N TA A+ YGL ++ T E++ + +D+G + +I+
Sbjct: 127 AAELVGLNVLQIMNSNTAVALNYGLFQQKSFNDTLEKHFMFYDMGASSTVATIVGYSMTK 186
Query: 398 TIEDGIFE------VKSTAGDTHLGGEDFDNRMVNHFVQEFKR--KYKKDLATNKRALS 550
T + GI E +K D LGG D R+ +H VQ FK+ K+K ++ + RA++
Sbjct: 187 TKDRGISETAPQLVIKGIGFDRTLGGHAIDMRLRDHLVQLFKKNYKFKGEVTQSSRAMA 245
>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 85.8 bits (203), Expect = 2e-17
Identities = 36/66 (54%), Positives = 51/66 (77%)
Frame = +2
Query: 350 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLA 529
+ ++DLGGGTFD+SIL I+ G+FEVK+T GDT+LGGEDFDN ++ + EFK++ DL+
Sbjct: 2 IAVYDLGGGTFDISILEIQKGVFEVKATNGDTYLGGEDFDNTLLKFLIAEFKKESGVDLS 61
Query: 530 TNKRAL 547
+ AL
Sbjct: 62 KDSMAL 67
>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
Length = 592
Score = 54.0 bits (124), Expect = 8e-08
Identities = 27/73 (36%), Positives = 47/73 (64%), Gaps = 5/73 (6%)
Frame = +2
Query: 341 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKR---- 508
+ VL++ LGG + DV++L++ +G+++V +T D LGG +FD +++ +FKR
Sbjct: 153 DSTVLVYRLGGASHDVTLLSVINGMYKVLATEYDGALGGRNFDEVLLDLLANDFKRQVLL 212
Query: 509 -KYKKDLATNKRA 544
K+K D TNKR+
Sbjct: 213 WKWKIDPLTNKRS 225
>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3235
Score = 33.1 bits (72), Expect = 0.16
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +2
Query: 299 AAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDF 466
A A L +G E + D G GT VS + +E+G +++ D H+ G F
Sbjct: 1505 AGAGGLSLAIEGPSEAKLTCQDNGDGTCSVSYIPVEEGDYDIHIKFADEHIPGSPF 1560
Score = 31.1 bits (67), Expect = 0.66
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 347 NVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDF 466
+ LI D G+F VS E+GI ++ GD H+ G F
Sbjct: 1428 DTLITDNQDGSFGVSYTPFEEGIHDLAVKFGDDHIPGSPF 1467
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = +2
Query: 287 NEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDF 466
N P A + GT E +I DLG G + + + E G V +TH+ G F
Sbjct: 3007 NAPVGKVSATVIAPSGT-ESKAVISDLGKGNYAIRFVPKEFGDHLVNVKFDETHIPGSPF 3065
Query: 467 DNRM 478
R+
Sbjct: 3066 KIRV 3069
>SB_30668| Best HMM Match : NIF3 (HMM E-Value=5.1)
Length = 1318
Score = 31.5 bits (68), Expect = 0.50
Identities = 20/72 (27%), Positives = 31/72 (43%)
Frame = -3
Query: 531 VARSFLYFLLNSWTKWLTMRLSKSSPPKWVSPAVDFTSKIPSSMVRMDTSKVPPPRSKIS 352
V R+ + N+ +L +L P KW P D +S P V + + PP S
Sbjct: 336 VGRALGFERFNALGYYLATKLQTEDPTKW-PPRYDDSSHFPHLWVVLSYDESTPPPRDGS 394
Query: 351 TFRSPVPFLSRP 316
+ PF+S+P
Sbjct: 395 AKPATQPFVSQP 406
>SB_27085| Best HMM Match : Filamin (HMM E-Value=1.5)
Length = 634
Score = 30.7 bits (66), Expect = 0.88
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +2
Query: 350 VLIFDLGGGTFDVSILTIEDGIFEVK 427
V I+DLG GT++++IL E G++ ++
Sbjct: 319 VPIYDLGNGTYEMAILFHEPGVYSIR 344
>SB_41920| Best HMM Match : Filamin (HMM E-Value=0.00015)
Length = 600
Score = 29.9 bits (64), Expect = 1.5
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 356 IFDLGGGTFDVSILTIEDGIFEV 424
+FDLG G+++V L +E G++ V
Sbjct: 311 VFDLGNGSYEVLFLVMEPGVYRV 333
>SB_48208| Best HMM Match : rve (HMM E-Value=2e-20)
Length = 1557
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/72 (26%), Positives = 30/72 (41%)
Frame = -3
Query: 531 VARSFLYFLLNSWTKWLTMRLSKSSPPKWVSPAVDFTSKIPSSMVRMDTSKVPPPRSKIS 352
V R+ + N+ + +L P KW D T I +V PPPR +
Sbjct: 543 VGRALGFERFNALGFYFATKLQTEDPTKWPPSYEDSTHFIHLWVVLSYEESTPPPRDGTA 602
Query: 351 TFRSPVPFLSRP 316
+ +PF+S+P
Sbjct: 603 KL-ATLPFVSQP 613
>SB_43375| Best HMM Match : Pneumo_att_G (HMM E-Value=3.6)
Length = 774
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = +3
Query: 360 LTSAAVPSTCPSLPSRMVSSR*NPPPATPTWEVRTL-TIAWSTTLSRSS 503
L S+A +T P+LP +V+ R PPP+T ++ T+ T+ STT + S+
Sbjct: 97 LDSSATTTTTPTLP--IVTLR--PPPSTSVTQIVTMTTVTISTTTAMST 141
>SB_33576| Best HMM Match : Pentaxin (HMM E-Value=1.3e-06)
Length = 799
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 447 WVSPAVDFTSKIPSSMVRMDTSKVPPPRSKISTFRSPVP 331
+++PA+ S +PS V +D VP P I+ + VP
Sbjct: 267 YLTPAISTQSTLPSGTVTLDQHNVPHPSGTITLDQHNVP 305
>SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85)
Length = 647
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 429 PPPATPTWEVRTL-TIAWSTTLSRSSRGNTKRTSLPTREL 545
PPPA T E L T +W+ T S + R KRT LPT L
Sbjct: 436 PPPAFQTDEPERLQTSSWTETASGTGREEFKRT-LPTAAL 474
>SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1324
Score = 29.1 bits (62), Expect = 2.7
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Frame = -2
Query: 433 GGFHLEDTILDGKDGHVEGTAAEVK--DKYISFSSTLFVKTVSNRSSS--RFIDDSENVQ 266
G F L D+ G++GH EG+ +EV + ++ + F +T S S F ++S ++Q
Sbjct: 285 GVFVLVDSKDSGENGHTEGSNSEVGTIENFVKTQTKQFKQTACKYSESNLEFNENSAHLQ 344
Query: 265 ---ARDGTC 248
AR TC
Sbjct: 345 VYNARISTC 353
Score = 29.1 bits (62), Expect = 2.7
Identities = 22/75 (29%), Positives = 32/75 (42%)
Frame = -3
Query: 492 TKWLTMRLSKSSPPKWVSPAVDFTSKIPSSMVRMDTSKVPPPRSKISTFRSPVPFLSRP* 313
+ W+ KS K P +S + SS TSK PP + +ST SP
Sbjct: 1244 SSWMVTNCQKSC--KRCPPEPPTSSIMQSSSNIPTTSKTPPSSTCLSTAVSPAAGADSNN 1301
Query: 312 AIAAAVGSLMIRRTF 268
A+ A+ SL++ F
Sbjct: 1302 AVNVAISSLVLPSLF 1316
>SB_50521| Best HMM Match : MFS_1 (HMM E-Value=0.0026)
Length = 1080
Score = 29.1 bits (62), Expect = 2.7
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Frame = +2
Query: 134 VLTKMKETAEAYLGKT----------VQNAVITVPAYFNDSQRQATKDAGTISGLNVLRI 283
V K T+E Y+G T + NA +T+P YF + +K G G+ +
Sbjct: 994 VTRKDNNTSETYVGLTENSFKTRRNKIYNAPLTLPPYFWCHPSRKSKKDGAKEGMAM--A 1051
Query: 284 INEPTAAAIAYGLDKKGTG 340
+++ I+Y LD+K TG
Sbjct: 1052 MSKERNQEISYKLDRKWTG 1070
>SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 833
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 363 TSAAVPSTCPSLPSRMVSSR*NPPPATP 446
T A P P++PSR +R PPP P
Sbjct: 784 TKPATPRVPPNIPSRPPGARPTPPPPPP 811
>SB_46921| Best HMM Match : Endomucin (HMM E-Value=6.3)
Length = 312
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = +3
Query: 381 STCPSLPSRMVSSR*NPPPATPTWEVRTLTIAWSTTLSRSSRGNTKRTSLPTREL 545
S CPSLP+ S TP + TI T + SS T TS PT ++
Sbjct: 46 SLCPSLPTSSTHSTSPTVQTTPAFTTSPATILPPTAKTTSS---TSSTSKPTEDV 97
>SB_45916| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1774
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -2
Query: 358 DKYISFSSTLFVKTVSNRSSSRFIDDSEN 272
+K ISF +LF+ VSN S+ R+I +E+
Sbjct: 752 NKVISFGPSLFMDKVSNASAGRYICIAES 780
>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -3
Query: 162 SAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKGQCFMSACTV 10
S F+F ST + +S +KV+ SPL + + P+ G S C V
Sbjct: 1108 SPAKFVFTSTGIVRASTRKVVPSPLRRSKVPPTVPAQRLFNGDRVESICNV 1158
>SB_30476| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 60
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Frame = +2
Query: 434 AGDTHLGGEDFD---NRMVNHFVQEF 502
AGD +GGEDFD +V+ F++ F
Sbjct: 19 AGDNDIGGEDFDVMSKSVVSRFIRHF 44
>SB_53811| Best HMM Match : Mab-21 (HMM E-Value=0.003)
Length = 700
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 419 EVKSTAGDTHLGGEDFDNRMVNHFVQEFK 505
EVK T+GD + E DN + H ++ FK
Sbjct: 21 EVKITSGDKGMTKEMIDNHIKGHILEYFK 49
>SB_14895| Best HMM Match : CcmE (HMM E-Value=5.3)
Length = 485
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -3
Query: 435 AVDFTSKIPSSMVRMDTSKVPPPRSKISTFRSPVPF 328
+V S+IP S + VPPPRS ++ +P PF
Sbjct: 43 SVQIDSQIPGSTFQTVLHPVPPPRS-VAMDNAPKPF 77
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,837,896
Number of Sequences: 59808
Number of extensions: 403227
Number of successful extensions: 1469
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1460
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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