Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0326
         (745 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    27   0.12 
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    23   3.4  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    22   4.5  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   4.5  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   4.5  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   4.5  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   4.5  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +2

Query: 2    ETPSQISATTNAPEVLPAVIDSDSVAVPEPAPVTSESLVAP-VEVLAVC 145
            E P  + A     E  P  + S +V VP P   T++SLV P  E   VC
Sbjct: 1780 EEPPSVEAVEEEREEAPPSVHSSTV-VPPPQHSTTQSLVDPKSEFKVVC 1827


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 56  VIDSDSVAVPEPAPVTSESLVAPVEVLA 139
           V+ S S     P P + ESL  PV V++
Sbjct: 281 VLQSPSSTSSSPEPRSPESLFKPVTVIS 308


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = -1

Query: 226 CAVRRWWTFC 197
           C ++ WW FC
Sbjct: 55  CELKLWWEFC 64


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +2

Query: 500 VPVAELEQVQPTEVPTVVESETLAKP 577
           VP   + ++ P E PT   S  L  P
Sbjct: 206 VPKPTVPKIPPAEFPTTSSSSALESP 231


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 208 WTFCYCWYS 182
           + FCYC+YS
Sbjct: 551 FAFCYCYYS 559



 Score = 21.8 bits (44), Expect = 6.0
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = -1

Query: 208 WTFCYCWYSCR 176
           ++FCYC+Y+ +
Sbjct: 270 FSFCYCYYNSK 280


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 17  ISATTNAPEVLPAVIDSDS 73
           ISA  NAP V PA + S S
Sbjct: 187 ISALVNAPSVSPASLPSIS 205


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +2

Query: 500 VPVAELEQVQPTEVPTVVESETLAKP 577
           VP   + ++ P E PT   S  L  P
Sbjct: 206 VPKPTVPKIPPAEFPTTSSSSALESP 231


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,273
Number of Sequences: 336
Number of extensions: 2557
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)