Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0325
(583 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 58 4e-09
02_05_0094 - 25758213-25758479,25758886-25758975,25759090-257591... 53 1e-07
04_04_0611 - 26594737-26594991,26595307-26595396,26595490-265955... 52 3e-07
12_02_0498 + 19721038-19721178,19721376-19721472,19721576-197216... 50 2e-06
03_02_0476 + 8768182-8768313,8768734-8768833,8768949-8768986,876... 49 2e-06
10_08_0547 - 18682357-18682683,18682971-18683060,18683279-186833... 47 1e-05
12_02_0992 + 25083397-25083537,25084198-25084228,25084971-250851... 35 0.041
01_06_0801 - 32085110-32085274,32086318-32086365,32086441-320864... 33 0.17
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410... 31 0.51
01_01_1204 + 9689855-9690844 30 1.2
05_04_0394 - 20906923-20907146,20907251-20907340,20908380-209087... 29 2.0
05_07_0282 + 28934359-28936458 29 3.6
09_04_0420 - 17416548-17416991 28 4.7
03_02_0490 - 8840577-8840914,8841009-8841067,8841168-8841283,884... 27 8.2
>06_01_0926 -
7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 58.4 bits (135), Expect = 4e-09
Identities = 24/51 (47%), Positives = 31/51 (60%)
Frame = +2
Query: 101 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCK 253
KC CG++VY EE A G +H+ CF+C C+ L +N S EG LYCK
Sbjct: 12 KCDSCGRTVYPVEELAADGRVYHRPCFRCTHCKATLQFSNYSSVEGVLYCK 62
Score = 53.6 bits (123), Expect = 1e-07
Identities = 24/58 (41%), Positives = 32/58 (55%)
Frame = +2
Query: 101 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHARKF 274
KC C K+VY E+ G +HK CF+C L +N HEG+LYCK H++ F
Sbjct: 111 KCVVCNKTVYPLEKVNLNGSSYHKSCFRCTHGGCTLSPSNNVTHEGKLYCKTHHSQLF 168
>02_05_0094 -
25758213-25758479,25758886-25758975,25759090-25759118,
25759208-25759307,25759411-25759545
Length = 206
Score = 53.2 bits (122), Expect = 1e-07
Identities = 22/51 (43%), Positives = 29/51 (56%)
Frame = +2
Query: 101 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCK 253
KC C K+V+ + A G+ +HK CFKC C+ L N S +G LYCK
Sbjct: 9 KCKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSMCNYSSMDGVLYCK 59
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/58 (36%), Positives = 32/58 (55%)
Frame = +2
Query: 101 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHARKF 274
KC C K+VY E+ G +HK CFKC +L +++ + G LYCK+ ++ F
Sbjct: 105 KCAACQKTVYPLEKLTLEGESYHKSCFKCSHGGCILTTSSYAALNGILYCKIHFSQLF 162
>04_04_0611 -
26594737-26594991,26595307-26595396,26595490-26595515,
26595603-26595702,26595820-26595954
Length = 201
Score = 52.0 bits (119), Expect = 3e-07
Identities = 21/51 (41%), Positives = 30/51 (58%)
Frame = +2
Query: 101 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCK 253
KC C K+V+ + A G+ +HK CFKC C+ +L + S +G LYCK
Sbjct: 9 KCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSMCSYSSMDGVLYCK 59
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +2
Query: 101 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHARKF 274
KC C K+VY E+ G +HK CFKC +L +++ + G LYCK+ + F
Sbjct: 104 KCAACQKTVYPLEKLTLEGESYHKSCFKCSHGGCILTTSSYAALNGVLYCKIHFGQLF 161
>12_02_0498 +
19721038-19721178,19721376-19721472,19721576-19721619,
19722120-19722203,19722441-19722662
Length = 195
Score = 49.6 bits (113), Expect = 2e-06
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +2
Query: 101 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCK 253
KC C K+VY ++ A +HK CF+C C+ L N + EG LYC+
Sbjct: 11 KCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLANYNSFEGVLYCR 61
Score = 49.2 bits (112), Expect = 2e-06
Identities = 22/54 (40%), Positives = 27/54 (50%)
Frame = +2
Query: 101 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCH 262
KC C K+VY E +HK CFKC + +N HEG+LYCK H
Sbjct: 109 KCVGCNKTVYPIERVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKLYCKHHH 162
>03_02_0476 +
8768182-8768313,8768734-8768833,8768949-8768986,
8769102-8769191,8769465-8769695
Length = 196
Score = 49.2 bits (112), Expect = 2e-06
Identities = 21/51 (41%), Positives = 28/51 (54%)
Frame = +2
Query: 101 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCK 253
KC C K+VY ++ G+ +H+ CFKC C+ L N S EG YCK
Sbjct: 8 KCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLGNYSSIEGVPYCK 58
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/51 (39%), Positives = 26/51 (50%)
Frame = +2
Query: 101 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCK 253
KC C K+ Y E+ G +HK CFKC + +N + EG LYCK
Sbjct: 107 KCATCSKTAYPLEKVTVEGQAYHKSCFKCSHGGCAISPSNYAALEGILYCK 157
>10_08_0547 -
18682357-18682683,18682971-18683060,18683279-18683301,
18683397-18683496,18683615-18683749
Length = 224
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +2
Query: 101 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCK 253
KC C K+V+ + A + +HK CF+C C+ L + S +G LYCK
Sbjct: 9 KCNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLSMCSYSSMDGVLYCK 59
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +2
Query: 101 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCK 253
KC C K+VY E+ G +H+ CFKC LL + + + H G LYC+
Sbjct: 103 KCTACKKTVYPLEKMTMEGECYHRTCFKCAHGGCLLTNASYASHNGILYCQ 153
>12_02_0992 +
25083397-25083537,25084198-25084228,25084971-25085139,
25085228-25085291,25085408-25085474,25086543-25086586,
25086835-25086922,25087079-25087238,25087659-25087779,
25087859-25087942,25088043-25088162,25088689-25088901,
25088995-25089054,25089144-25089262,25089407-25089465,
25089585-25089919
Length = 624
Score = 35.1 bits (77), Expect = 0.041
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 164 WHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCH 262
WH CF+C C K + + HE + Y K C+
Sbjct: 277 WHPQCFRCFACNKPISEYEFAMHEDQPYHKSCY 309
>01_06_0801 -
32085110-32085274,32086318-32086365,32086441-32086483,
32086588-32086651,32086740-32086792,32086899-32086937,
32087031-32087113,32087200-32087280
Length = 191
Score = 33.1 bits (72), Expect = 0.17
Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +2
Query: 80 FKPADNP-KCPKCGK-SVYAAEERVAGGL-KWHKMCFKCGLCQKLLDSTNCSEHEGE 241
+KP P KC KCGK +V A V K +C KC C K L + SE E E
Sbjct: 59 YKPIVEPAKCQKCGKRNVRQAYHNVCTACSKDLGICAKCCTCVKALVGRDLSEQESE 115
>06_01_0579 +
4099039-4099086,4099798-4099848,4100151-4100286,
4100287-4100401,4100496-4100528,4101037-4101166,
4101663-4101751,4102042-4102148,4102238-4102309,
4102384-4102764,4104907-4105064,4105581-4105674,
4106082-4106089,4106297-4106387,4107136-4107289,
4108257-4108377,4108468-4108551,4108946-4109065,
4109181-4109393,4109482-4109544,4109668-4109783,
4110132-4110190,4111126-4111445
Length = 920
Score = 31.5 bits (68), Expect = 0.51
Identities = 14/57 (24%), Positives = 20/57 (35%)
Frame = +2
Query: 104 CPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHARKF 274
C C + G WH CF+C C + + S Y K C+ +F
Sbjct: 558 CAGCHSEIGHGRFLSCMGAVWHPECFRCHACNQPIYDYEFSMSGNHPYHKTCYKERF 614
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Frame = +2
Query: 101 KCPKCGKSVYAAEERVAGGLKWHKMCF------KCGLCQKLL 208
+C C + +Y E ++G +HK C+ KC +C++ +
Sbjct: 584 RCHACNQPIYDYEFSMSGNHPYHKTCYKERFHPKCDVCKQFI 625
>01_01_1204 + 9689855-9690844
Length = 329
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 134 AEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHA 265
AEE AGGL + C +C + + +E E E+ C CH+
Sbjct: 2 AEEAAAGGL------YYCHMCASTVSAVAAAEGEVEIKCPYCHS 39
>05_04_0394 -
20906923-20907146,20907251-20907340,20908380-20908785,
20909264-20910247
Length = 567
Score = 29.5 bits (63), Expect = 2.0
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -2
Query: 402 VSAIRNFCCDAARAQFAFSPFKW 334
+ AI CCD A A F P +W
Sbjct: 177 IDAIERLCCDRALAAFGLDPSRW 199
>05_07_0282 + 28934359-28936458
Length = 699
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +3
Query: 69 AQCLSNPLITRSARNVANQFTPLRSAWLVASNGTKCASNVVCAKNCWTQPTAQSTRVNC 245
A S PL+ RS + + +P R + A+ KC S +V ++ TA S V C
Sbjct: 589 ASASSRPLLDRSG---STRSSPPRKVAIAAAKAGKCRSGIVTRLKPSSKITASSMSVTC 644
>09_04_0420 - 17416548-17416991
Length = 147
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +1
Query: 151 WWPQMAQNVLQMWSV 195
W P MA+NV++MWSV
Sbjct: 37 WDPAMAENVVKMWSV 51
>03_02_0490 -
8840577-8840914,8841009-8841067,8841168-8841283,
8841578-8841640,8841826-8842038,8842211-8842330,
8842453-8842578,8842593-8842749,8842830-8842962,
8843054-8843138,8843305-8843421
Length = 508
Score = 27.5 bits (58), Expect = 8.2
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +2
Query: 155 GLKWHKMCFKCGLCQ 199
G+ WH CF+C C+
Sbjct: 131 GMYWHPQCFRCSSCR 145
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,185,489
Number of Sequences: 37544
Number of extensions: 264545
Number of successful extensions: 747
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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