Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0325
         (583 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    24   1.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   2.9  
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           22   3.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.9  

>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +3

Query: 129 TPLRSAWLVASNGTKCASNVVCAKNCWTQPTAQSTRVNCTAK 254
           +PL+      +  T   + +V   NC   P   +T   CTA+
Sbjct: 391 SPLKREGGPPTGATTGPNEIVTCTNCGPNPCTHTTTNGCTAE 432


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 8   CTRVRELDSRSDSTNRIS*ASTMPFKPADN 97
           C R R+LDS SDS   I   +  P KPA +
Sbjct: 568 CPRFRKLDSPSDS--GIESGTEKPDKPASS 595


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +3

Query: 159 SNGTKCASNVVCAKNCWTQPTAQSTRVNCTAK 254
           +  T   + +V   NC   P   +T   CTA+
Sbjct: 415 TGATTGPNEIVTCTNCGPNPCTHTTTNGCTAE 446


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +3

Query: 159 SNGTKCASNVVCAKNCWTQPTAQSTRVNCTAK 254
           +  T   + +V   NC   P   +T   CTA+
Sbjct: 435 TGATTGPNEIVTCTNCGPNPCTHTTTNGCTAE 466


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +3

Query: 159 SNGTKCASNVVCAKNCWTQPTAQSTRVNCTAK 254
           +  T   + +V   NC   P   +T   CTA+
Sbjct: 384 TGATTGPNEIVTCTNCGPNPCTHTTTNGCTAE 415


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 536 NVIKESTTYLEKKKKK 583
           NVI+++ TY E  K+K
Sbjct: 65  NVIRDAVTYTEHTKRK 80


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 267  RAWHTLQYSSPSCSEQLVESSN 202
            R W  L+Y+ PS  +  +ES +
Sbjct: 1195 RFWERLRYAIPSAGDISIESKS 1216


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 179 FKCGLCQKLLDSTN 220
           ++C LCQK  D  N
Sbjct: 62  YQCLLCQKAFDQKN 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,513
Number of Sequences: 438
Number of extensions: 3032
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)