Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0323
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32...    63   2e-10
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30...    52   3e-07
03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551           29   2.7  
02_05_0624 - 30451032-30451140,30451294-30451409,30451506-304515...    29   3.5  
02_05_0448 - 29100674-29100716,29100821-29100902,29101010-291011...    28   6.2  
02_01_0485 + 3487578-3487635,3488281-3488399,3488600-3488698,348...    28   6.2  
06_03_0355 + 19822110-19824491                                         28   8.1  

>12_01_0039 -
           319871-319914,320021-320084,320198-320263,320397-320458,
           321211-321298,321401-321461,321542-321625,322332-322630
          Length = 255

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 45/126 (35%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
 Frame = +2

Query: 320 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLM 499
           C   + +QI  E  AS  Y ++ AYF  D V   GFAK F +++ EER+HA KL+ Y  M
Sbjct: 91  CEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNM 150

Query: 500 RG---KLTGSVTDLITYRAPANTSWESGASALEHALKLESDVTNSIREVIKTCESSFNDY 670
           RG   +L   VT L  +  P          A+E AL LE  V   +   + +  S  ND 
Sbjct: 151 RGGRVRLQSIVTPLTEFDHPEK---GDALYAMELALALEKLVNEKLHN-LHSVASRCNDP 206

Query: 671 HLVDYL 688
            L D++
Sbjct: 207 QLTDFV 212


>11_01_0040 -
           304439-304482,304589-304652,304766-304831,305509-305640,
           305744-305804,305885-306018,306310-306654
          Length = 281

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 31/69 (44%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
 Frame = +2

Query: 353 EVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG---KLTGSV 523
           E  AS  Y ++ AYF  D V   GFAK F +++ EER+HA KLI Y  MRG   +L   V
Sbjct: 134 EYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRLQSIV 193

Query: 524 TDLITYRAP 550
           T L  +  P
Sbjct: 194 TPLTEFDHP 202


>03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551
          Length = 589

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 572 GASALEHALKLESDVTNSIREVIKTCESSFNDYHLV 679
           G   LE+     +D+TN+  E I T  SS ND+ LV
Sbjct: 381 GCPHLEYWAVHVTDITNAALEAIGTYSSSLNDFRLV 416


>02_05_0624 -
           30451032-30451140,30451294-30451409,30451506-30451580,
           30452033-30452093,30452198-30452424
          Length = 195

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 380 AMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLL 496
           A+  YF + TV  P  A  FF +   +RE  T L+D LL
Sbjct: 115 ALPKYFQVGTVIEP--ASEFFSSRLTKRERKTTLVDELL 151


>02_05_0448 -
           29100674-29100716,29100821-29100902,29101010-29101130,
           29101481-29101546,29101628-29101735,29102083-29102148,
           29102605-29102633,29102773-29102902
          Length = 214

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = -2

Query: 301 PLIPDGDGADVTLCSCGRS*GSNESEDSKENSPHLNFSYNHRFFDDTQKN 152
           P+I  G+  D  +  C          D KE  PH       RFF+D +KN
Sbjct: 129 PMIDQGEKDDKIIAVCADDPEYRHFRDIKEIPPH-RLQEIRRFFEDYKKN 177


>02_01_0485 +
           3487578-3487635,3488281-3488399,3488600-3488698,
           3488795-3488851,3488954-3489109,3489227-3489311,
           3489489-3489579,3489693-3489857,3489923-3490045,
           3490244-3490319,3490486-3490633,3490769-3491934,
           3492041-3492231,3492321-3492513
          Length = 908

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 502 GKADRLRNRPHHVQGPRKHVVGERRISPRARPQAGE*R-HQQHPGGHQDLREQ 657
           G + +  ++P ++Q P +H        P+ +PQ  +   HQQ P  HQ +++Q
Sbjct: 502 GNSIQGHSQPEYLQQPLQHCQSFNEQKPQLQPQQQQQESHQQQP-QHQQMQQQ 553


>06_03_0355 + 19822110-19824491
          Length = 793

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
 Frame = +2

Query: 428 AKLFFDAATEEREHATKLIDYLL-MRGKLTGSVTDLITYRAPANTSWESGASALEHALKL 604
           A +F++    E +       YL  M  +    +  L + R      W++     EH L +
Sbjct: 487 ASMFYEQKERELQDVLVEKQYLANMLQEKEQIIQSLNSARFEQENKWQAELRRFEHDLNV 546

Query: 605 ESDVTNSIREVIKTCESSFNDY 670
            + +    R  +K   +SF++Y
Sbjct: 547 MAQLVTGYRRALKQNRASFDEY 568


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,023,947
Number of Sequences: 37544
Number of extensions: 359915
Number of successful extensions: 990
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)