Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0323
(695 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40300.1 68415.m04964 ferritin, putative similar to ferritin ... 60 1e-09
At3g11050.1 68416.m01333 ferritin, putative similar to ferritin ... 54 9e-08
At3g56090.1 68416.m06234 ferritin, putative similar to ferritin ... 52 3e-07
At5g01600.1 68418.m00075 ferritin 1 (FER1) identical to ferritin... 52 5e-07
At3g61010.1 68416.m06826 glycosyl hydrolase family protein 85 hy... 40 0.002
At1g13050.1 68414.m01513 expressed protein 29 2.9
At2g18230.1 68415.m02124 inorganic pyrophosphatase [soluble] (PP... 29 3.9
At1g79060.1 68414.m09218 expressed protein 29 3.9
At4g25520.1 68417.m03680 transcriptional co-regulator family pro... 28 5.1
At5g12040.2 68418.m01407 carbon-nitrogen hydrolase family protei... 28 6.8
At5g12040.1 68418.m01408 carbon-nitrogen hydrolase family protei... 28 6.8
>At2g40300.1 68415.m04964 ferritin, putative similar to ferritin
subunit cowpea2 precursor [Vigna unguiculata]
GI:2970654; contains Pfam profile PF00210: Ferritin-like
domain
Length = 259
Score = 60.5 bits (140), Expect = 1e-09
Identities = 43/126 (34%), Positives = 59/126 (46%), Gaps = 3/126 (2%)
Frame = +2
Query: 320 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLM 499
C + +QI E S Y AM AYF D + G AK F +++ EEREHA KL++Y
Sbjct: 97 CEAAINEQINVEYNVSYVYHAMYAYFDRDNIALKGLAKFFKESSLEEREHAEKLMEYQNK 156
Query: 500 RG---KLTGSVTDLITYRAPANTSWESGASALEHALKLESDVTNSIREVIKTCESSFNDY 670
RG KL V L + + +E AL LE V + + + S ND
Sbjct: 157 RGGRVKLQSIVMPLSEFE---HVDKGDALYGMELALSLEKLVNEKLLN-LHSVASKNNDV 212
Query: 671 HLVDYL 688
HL D++
Sbjct: 213 HLADFI 218
>At3g11050.1 68416.m01333 ferritin, putative similar to ferritin
subunit cowpea2 precursor GI:2970654 (Vigna
unguiculata); contains Pfam profile PF00210:
Ferritin-like domain
Length = 253
Score = 54.0 bits (124), Expect = 9e-08
Identities = 39/116 (33%), Positives = 54/116 (46%)
Frame = +2
Query: 341 QIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKLTGS 520
QI E S Y A+ AYF D V GFAK F D++ EER HA ++Y RG
Sbjct: 96 QINVEYNVSYVYHALYAYFDRDNVGLKGFAKFFNDSSLEERGHAEMFMEYQNKRGGRVKL 155
Query: 521 VTDLITYRAPANTSWESGASALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYL 688
+ L+ + A+E AL LE +TN +++ ND LVD++
Sbjct: 156 QSILMPVSEFDHEEKGDALHAMELALSLEK-LTNEKLLKLQSVGVKNNDVQLVDFV 210
>At3g56090.1 68416.m06234 ferritin, putative similar to ferritin
subunit cowpea2 precursor [Vigna unguiculata]
GI:2970654; contains Pfam profile PF00210: Ferritin-like
domain
Length = 259
Score = 52.4 bits (120), Expect = 3e-07
Identities = 41/126 (32%), Positives = 57/126 (45%), Gaps = 3/126 (2%)
Frame = +2
Query: 320 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLM 499
C + +QI E S Y A+ AYF D V G AK F +++ EEREHA L++Y
Sbjct: 95 CEAAVNEQINVEYNVSYVYHALYAYFDRDNVALKGLAKFFKESSVEEREHAELLMEYQNK 154
Query: 500 RG---KLTGSVTDLITYRAPANTSWESGASALEHALKLESDVTNSIREVIKTCESSFNDY 670
RG KL V + P A+E AL LE V + + + S +D
Sbjct: 155 RGGRVKLQPMVLPQSEFDHPEK---GDALYAMELALSLEKLVNEKLLN-LHSVASKNDDV 210
Query: 671 HLVDYL 688
L D++
Sbjct: 211 QLADFI 216
>At5g01600.1 68418.m00075 ferritin 1 (FER1) identical to ferritin
[Arabidopsis thaliana] GI:1246401, GI:8163920
Length = 255
Score = 51.6 bits (118), Expect = 5e-07
Identities = 40/123 (32%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Frame = +2
Query: 329 MMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG- 505
++ +QI E S Y +M AYF D V G AK F +++ EER HA K ++Y RG
Sbjct: 97 VINEQINVEYNVSYVYHSMYAYFDRDNVAMKGLAKFFKESSEEERGHAEKFMEYQNQRGG 156
Query: 506 --KLTGSVTDLITYRAPANTSWESGASALEHALKLESDVTNSIREVIKTCESSFNDYHLV 679
KL V+ + + + A+E AL LE + V K S ND L
Sbjct: 157 RVKLHPIVSPISEFE---HAEKGDALYAMELALSLEKLTNEKLLNVHKVA-SENNDPQLA 212
Query: 680 DYL 688
D++
Sbjct: 213 DFV 215
>At3g61010.1 68416.m06826 glycosyl hydrolase family protein 85
hypothetical protein F9F8.14 - Arabidopsis thaliana,
EMBL:AC009991
Length = 355
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +2
Query: 344 IQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDY 490
I E S Y A+ AY D V GF K F D++ EER +A K ++Y
Sbjct: 297 IDVEYNVSYVYHALDAYIERDNVGLKGFTKFFNDSSLEERGYAEKFMEY 345
>At1g13050.1 68414.m01513 expressed protein
Length = 317
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +1
Query: 496 HEGKADRLRNRPHHVQGPRKHVVGERRISPRARPQAGE*RHQQHP 630
H+G N PHH Q P+ H V R+ + R RHQ P
Sbjct: 21 HQGGPSSSWNSPHHHQIPQAHSVAPPRVKIKTRG-----RHQTEP 60
>At2g18230.1 68415.m02124 inorganic pyrophosphatase [soluble] (PPA)
/ pyrophosphate phospho-hydrolase / PPase nearly
identical to SP|P21216 Soluble inorganic pyrophosphatase
(EC 3.6.1.1) (Pyrophosphate phospho- hydrolase) (PPase)
{Arabidopsis thaliana}
Length = 218
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -2
Query: 301 PLIPDGDGADVTLCSCGRS*GSNESEDSKENSPHLNFSYNHRFFDDTQKN 152
P+I G+ D + C D KE PH + RFF+D +KN
Sbjct: 133 PMIDQGEKDDKIIAVCADDPEFRHYRDIKELPPH-RLAEIRRFFEDYKKN 181
>At1g79060.1 68414.m09218 expressed protein
Length = 396
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -2
Query: 322 ASLLHGEPLIPDGDGADVTLCSCGRS*GSNESEDSKENSPHLN 194
ASLL PL+ D D V++ S S S+ S E+ P L+
Sbjct: 175 ASLLMSLPLLKDSDSESVSISSSRMSLSSSSSGHDHEDLPRLS 217
>At4g25520.1 68417.m03680 transcriptional co-regulator family
protein contains similarity to GP|18033922|gb|AAL57277
SEUSS transcriptional co-regulator [Arabidopsis
thaliana]
Length = 748
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +3
Query: 417 APASRSYSSMLRLKNASTRPSSLTTCS*GES*QAP*PTSSRT 542
A A +Y SML +NA P+S T G S Q P P S+++
Sbjct: 558 AAALTNYQSMLMRQNAMNNPNSNTGKQEGFSSQNPTPNSNQS 599
>At5g12040.2 68418.m01407 carbon-nitrogen hydrolase family protein
similar to Nit protein 2 [Homo sapiens] GI:9367116;
contains Pfam profile PF00795: hydrolase,
carbon-nitrogen family
Length = 294
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 569 SGASALEHALKLESDVTNSIREVIKTCESSFN 664
S S H LKL S T+++R + + SSFN
Sbjct: 37 SPRSITSHTLKLPSSSTSALRSISSSMASSFN 68
>At5g12040.1 68418.m01408 carbon-nitrogen hydrolase family protein
similar to Nit protein 2 [Homo sapiens] GI:9367116;
contains Pfam profile PF00795: hydrolase,
carbon-nitrogen family
Length = 369
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 569 SGASALEHALKLESDVTNSIREVIKTCESSFN 664
S S H LKL S T+++R + + SSFN
Sbjct: 37 SPRSITSHTLKLPSSSTSALRSISSSMASSFN 68
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,076,600
Number of Sequences: 28952
Number of extensions: 258491
Number of successful extensions: 702
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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