Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0322
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 32 0.055
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 29 0.39
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo... 27 1.6
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory... 26 2.7
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 26 3.6
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 25 4.8
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 25 6.3
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 25 6.3
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 25 6.3
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 25 6.3
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 25 8.4
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 31.9 bits (69), Expect = 0.055
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = -3
Query: 401 IPPGHDQRVVRVTNNAEAREEGAPQHPVVPDIPQEGAENR-PLRNTTHDRKTMKGPTVPG 225
+P G+ V ++N G P HP +PQ+G ++ P+ + D++TM+ T P
Sbjct: 178 LPSGYKIEVQLDSSNTSVVRVGTPMHP----LPQQGVQSTLPVAPSNEDQRTMES-TSP- 231
Query: 224 TYDRPGPQIGPNQPAEVE 171
T +P P PN + E
Sbjct: 232 TDSQPQPS-APNLVSSTE 248
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 29.1 bits (62), Expect = 0.39
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 100 SYILFLCIFVT*YKLQLPLFTRHYLWLTGRECL 2
S +LF IF YKL+ FT +LW+ R L
Sbjct: 330 SLVLFFTIFTNAYKLRQTNFTLDFLWVLWRNPL 362
>SPBC56F2.11 |met6||homoserine
O-acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 489
Score = 27.1 bits (57), Expect = 1.6
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +1
Query: 172 STSAG-WLGPIWGPGRSYVP 228
S AG W GP+ GPGR++ P
Sbjct: 78 SADAGDWWGPLLGPGRAFDP 97
>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
factor |Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 26.2 bits (55), Expect = 2.7
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 218 DRPGPQIGPNQPAEVEGHSMPLQCPPY 138
DRP P I + P+ HS P P Y
Sbjct: 130 DRPLPNIRNSAPSATRSHSTPCVAPGY 156
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 25.8 bits (54), Expect = 3.6
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +3
Query: 246 HRFPVVRGVPQGSVLGPLLWNI 311
+++ +V G PQGS++ P+L NI
Sbjct: 414 YKYDIV-GTPQGSIVSPILANI 434
>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 4.8
Identities = 13/49 (26%), Positives = 17/49 (34%)
Frame = -3
Query: 302 QEGAENRPLRNTTHDRKTMKGPTVPGTYDRPGPQIGPNQPAEVEGHSMP 156
Q+ PL T P P+ P QP +V GH+ P
Sbjct: 353 QQATAAEPLATPPRHPLNATNGTSQSNISTPLPEPTPGQPRKVSGHNPP 401
>SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 980
Score = 25.0 bits (52), Expect = 6.3
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 218 DRPGPQIGPNQPAEVEGHS 162
+R G +I PN+P + E HS
Sbjct: 958 ERIGQKIDPNKPTDAEDHS 976
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.0 bits (52), Expect = 6.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 332 PQHPVVPDIPQEGAENRPL 276
PQ P VP +P+ G N P+
Sbjct: 680 PQPPAVPVVPEAGQLNEPV 698
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 25.0 bits (52), Expect = 6.3
Identities = 17/58 (29%), Positives = 23/58 (39%)
Frame = -3
Query: 287 NRPLRNTTHDRKTMKGPTVPGTYDRPGPQIGPNQPAEVEGHSMPLQCPPYNYGSLGHF 114
N LRN +R + + RP Q+G QP P++ P GSL F
Sbjct: 180 NGSLRNDKWNRSSFSEALSSSRFSRP--QVGQQQPLSSAFPFQPVKQPTEQPGSLHPF 235
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 25.0 bits (52), Expect = 6.3
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = +3
Query: 270 VPQGSVLGPLLWNIGYDWVLRGA--LLPGLRVICYADDTLVVARGDDFRESARLATAGVA 443
+P G P W +G DW G ++ G+ V TL G + + R+ T G A
Sbjct: 215 LPYGCGTWPAFWTLGDDWPNGGEIDIVEGVNVGTSNQVTLHTGDGCEMEDIKRVMT-GTA 273
Query: 444 L 446
L
Sbjct: 274 L 274
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -2
Query: 288 EPTPAEHHARPENDEGSHRTRYIR 217
E E+H +N+E H T+ IR
Sbjct: 190 EHNEPEYHTESKNEESEHNTKSIR 213
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,273,779
Number of Sequences: 5004
Number of extensions: 52748
Number of successful extensions: 144
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -