BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0322 (499 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 32 0.055 SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 29 0.39 SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo... 27 1.6 SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory... 26 2.7 SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 26 3.6 SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 25 4.8 SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 25 6.3 SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 25 6.3 SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 25 6.3 SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 25 6.3 SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 25 8.4 >SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces pombe|chr 2|||Manual Length = 1154 Score = 31.9 bits (69), Expect = 0.055 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Frame = -3 Query: 401 IPPGHDQRVVRVTNNAEAREEGAPQHPVVPDIPQEGAENR-PLRNTTHDRKTMKGPTVPG 225 +P G+ V ++N G P HP +PQ+G ++ P+ + D++TM+ T P Sbjct: 178 LPSGYKIEVQLDSSNTSVVRVGTPMHP----LPQQGVQSTLPVAPSNEDQRTMES-TSP- 231 Query: 224 TYDRPGPQIGPNQPAEVE 171 T +P P PN + E Sbjct: 232 TDSQPQPS-APNLVSSTE 248 >SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 2100 Score = 29.1 bits (62), Expect = 0.39 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = -1 Query: 100 SYILFLCIFVT*YKLQLPLFTRHYLWLTGRECL 2 S +LF IF YKL+ FT +LW+ R L Sbjct: 330 SLVLFFTIFTNAYKLRQTNFTLDFLWVLWRNPL 362 >SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharomyces pombe|chr 2|||Manual Length = 489 Score = 27.1 bits (57), Expect = 1.6 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%) Frame = +1 Query: 172 STSAG-WLGPIWGPGRSYVP 228 S AG W GP+ GPGR++ P Sbjct: 78 SADAGDWWGPLLGPGRAFDP 97 >SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory factor |Schizosaccharomyces pombe|chr 2|||Manual Length = 633 Score = 26.2 bits (55), Expect = 2.7 Identities = 11/27 (40%), Positives = 13/27 (48%) Frame = -3 Query: 218 DRPGPQIGPNQPAEVEGHSMPLQCPPY 138 DRP P I + P+ HS P P Y Sbjct: 130 DRPLPNIRNSAPSATRSHSTPCVAPGY 156 >SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosaccharomyces pombe|chr mitochondrial|||Manual Length = 807 Score = 25.8 bits (54), Expect = 3.6 Identities = 10/22 (45%), Positives = 17/22 (77%) Frame = +3 Query: 246 HRFPVVRGVPQGSVLGPLLWNI 311 +++ +V G PQGS++ P+L NI Sbjct: 414 YKYDIV-GTPQGSIVSPILANI 434 >SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual Length = 537 Score = 25.4 bits (53), Expect = 4.8 Identities = 13/49 (26%), Positives = 17/49 (34%) Frame = -3 Query: 302 QEGAENRPLRNTTHDRKTMKGPTVPGTYDRPGPQIGPNQPAEVEGHSMP 156 Q+ PL T P P+ P QP +V GH+ P Sbjct: 353 QQATAAEPLATPPRHPLNATNGTSQSNISTPLPEPTPGQPRKVSGHNPP 401 >SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharomyces pombe|chr 1|||Manual Length = 980 Score = 25.0 bits (52), Expect = 6.3 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = -3 Query: 218 DRPGPQIGPNQPAEVEGHS 162 +R G +I PN+P + E HS Sbjct: 958 ERIGQKIDPNKPTDAEDHS 976 >SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 857 Score = 25.0 bits (52), Expect = 6.3 Identities = 9/19 (47%), Positives = 12/19 (63%) Frame = -3 Query: 332 PQHPVVPDIPQEGAENRPL 276 PQ P VP +P+ G N P+ Sbjct: 680 PQPPAVPVVPEAGQLNEPV 698 >SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 749 Score = 25.0 bits (52), Expect = 6.3 Identities = 17/58 (29%), Positives = 23/58 (39%) Frame = -3 Query: 287 NRPLRNTTHDRKTMKGPTVPGTYDRPGPQIGPNQPAEVEGHSMPLQCPPYNYGSLGHF 114 N LRN +R + + RP Q+G QP P++ P GSL F Sbjct: 180 NGSLRNDKWNRSSFSEALSSSRFSRP--QVGQQQPLSSAFPFQPVKQPTEQPGSLHPF 235 >SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces pombe|chr 2|||Manual Length = 419 Score = 25.0 bits (52), Expect = 6.3 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%) Frame = +3 Query: 270 VPQGSVLGPLLWNIGYDWVLRGA--LLPGLRVICYADDTLVVARGDDFRESARLATAGVA 443 +P G P W +G DW G ++ G+ V TL G + + R+ T G A Sbjct: 215 LPYGCGTWPAFWTLGDDWPNGGEIDIVEGVNVGTSNQVTLHTGDGCEMEDIKRVMT-GTA 273 Query: 444 L 446 L Sbjct: 274 L 274 >SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosaccharomyces pombe|chr 2|||Manual Length = 515 Score = 24.6 bits (51), Expect = 8.4 Identities = 9/24 (37%), Positives = 13/24 (54%) Frame = -2 Query: 288 EPTPAEHHARPENDEGSHRTRYIR 217 E E+H +N+E H T+ IR Sbjct: 190 EHNEPEYHTESKNEESEHNTKSIR 213 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,273,779 Number of Sequences: 5004 Number of extensions: 52748 Number of successful extensions: 144 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 136 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 143 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 196153982 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -