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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0322
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    32   0.055
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    29   0.39 
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    27   1.6  
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    26   2.7  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   3.6  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    25   4.8  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    25   6.3  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   6.3  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    25   6.3  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    25   6.3  
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    25   8.4  

>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 31.9 bits (69), Expect = 0.055
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = -3

Query: 401 IPPGHDQRVVRVTNNAEAREEGAPQHPVVPDIPQEGAENR-PLRNTTHDRKTMKGPTVPG 225
           +P G+   V   ++N      G P HP    +PQ+G ++  P+  +  D++TM+  T P 
Sbjct: 178 LPSGYKIEVQLDSSNTSVVRVGTPMHP----LPQQGVQSTLPVAPSNEDQRTMES-TSP- 231

Query: 224 TYDRPGPQIGPNQPAEVE 171
           T  +P P   PN  +  E
Sbjct: 232 TDSQPQPS-APNLVSSTE 248


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 29.1 bits (62), Expect = 0.39
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 100 SYILFLCIFVT*YKLQLPLFTRHYLWLTGRECL 2
           S +LF  IF   YKL+   FT  +LW+  R  L
Sbjct: 330 SLVLFFTIFTNAYKLRQTNFTLDFLWVLWRNPL 362


>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +1

Query: 172 STSAG-WLGPIWGPGRSYVP 228
           S  AG W GP+ GPGR++ P
Sbjct: 78  SADAGDWWGPLLGPGRAFDP 97


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 218 DRPGPQIGPNQPAEVEGHSMPLQCPPY 138
           DRP P I  + P+    HS P   P Y
Sbjct: 130 DRPLPNIRNSAPSATRSHSTPCVAPGY 156


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +3

Query: 246 HRFPVVRGVPQGSVLGPLLWNI 311
           +++ +V G PQGS++ P+L NI
Sbjct: 414 YKYDIV-GTPQGSIVSPILANI 434


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/49 (26%), Positives = 17/49 (34%)
 Frame = -3

Query: 302 QEGAENRPLRNTTHDRKTMKGPTVPGTYDRPGPQIGPNQPAEVEGHSMP 156
           Q+     PL             T       P P+  P QP +V GH+ P
Sbjct: 353 QQATAAEPLATPPRHPLNATNGTSQSNISTPLPEPTPGQPRKVSGHNPP 401


>SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 980

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 218  DRPGPQIGPNQPAEVEGHS 162
            +R G +I PN+P + E HS
Sbjct: 958  ERIGQKIDPNKPTDAEDHS 976


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 332 PQHPVVPDIPQEGAENRPL 276
           PQ P VP +P+ G  N P+
Sbjct: 680 PQPPAVPVVPEAGQLNEPV 698


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 17/58 (29%), Positives = 23/58 (39%)
 Frame = -3

Query: 287 NRPLRNTTHDRKTMKGPTVPGTYDRPGPQIGPNQPAEVEGHSMPLQCPPYNYGSLGHF 114
           N  LRN   +R +         + RP  Q+G  QP        P++ P    GSL  F
Sbjct: 180 NGSLRNDKWNRSSFSEALSSSRFSRP--QVGQQQPLSSAFPFQPVKQPTEQPGSLHPF 235


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = +3

Query: 270 VPQGSVLGPLLWNIGYDWVLRGA--LLPGLRVICYADDTLVVARGDDFRESARLATAGVA 443
           +P G    P  W +G DW   G   ++ G+ V      TL    G +  +  R+ T G A
Sbjct: 215 LPYGCGTWPAFWTLGDDWPNGGEIDIVEGVNVGTSNQVTLHTGDGCEMEDIKRVMT-GTA 273

Query: 444 L 446
           L
Sbjct: 274 L 274


>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 288 EPTPAEHHARPENDEGSHRTRYIR 217
           E    E+H   +N+E  H T+ IR
Sbjct: 190 EHNEPEYHTESKNEESEHNTKSIR 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,273,779
Number of Sequences: 5004
Number of extensions: 52748
Number of successful extensions: 144
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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