Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0321
(640 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0467 - 18479199-18479543,18481145-18481417 72 4e-13
08_02_0274 - 15192670-15192983,15193110-15193200,15193295-151936... 31 0.58
07_03_1343 - 25905475-25905678,25907025-25907167,25907273-259073... 29 2.4
04_01_0542 - 7005972-7007443,7008568-7008766,7008780-7008855,700... 29 3.1
11_05_0074 + 18850567-18851095,18851249-18851274,18851353-188516... 28 7.2
09_01_0069 - 1010888-1011226,1011412-1011600 28 7.2
04_03_0558 + 17111138-17111996,17112474-17112564,17112647-171132... 27 9.5
>07_03_0467 - 18479199-18479543,18481145-18481417
Length = 205
Score = 71.7 bits (168), Expect = 4e-13
Identities = 42/122 (34%), Positives = 68/122 (55%)
Frame = +2
Query: 110 LQVRNYADAPKGDEMALTFAAGNKVFYDKQVVKQIDVPSFSGAFGILPKHVPTLAVLRPG 289
+Q R A ++ + F K + V + VP+ +G G+LP HV T+A L+PG
Sbjct: 61 MQPRPPTPAAIPSKLTVNFVLPYKSEIANKEVDMVIVPATTGQMGVLPGHVSTIAELKPG 120
Query: 290 VVTILENDGKQNKIFVSSGTITVNDDSSVQVLAEEAHPLESIDRSAAQEALSKAQSEFNS 469
V+++ E + K FVSSG V+ +S ++A EA PL+ ID +A Q+ L++ ++ S
Sbjct: 121 VLSVHEGNDI-TKYFVSSGFAFVHANSIADIVAVEAVPLDQIDPAAVQQGLAEFNAKLGS 179
Query: 470 AS 475
AS
Sbjct: 180 AS 181
>08_02_0274 -
15192670-15192983,15193110-15193200,15193295-15193603,
15193859-15193944,15196034-15196088,15196689-15196757,
15197027-15197074,15198090-15198203,15198464-15198526,
15199236-15199427,15199519-15199643,15199723-15199779,
15200209-15200332,15200478-15200543,15200656-15200738,
15200916-15201036,15201663-15201773,15201841-15201936,
15202032-15202107,15202878-15203016,15203283-15203346,
15203454-15203527,15203845-15203923,15204473-15204547
Length = 876
Score = 31.5 bits (68), Expect = 0.58
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 4/127 (3%)
Frame = +2
Query: 107 RLQVRNYADAPKGDEMALTFAAGNKVFYDKQV---VKQIDVP-SFSGAFGILPKHVPTLA 274
R+ RN+A A ++ L N K+ +K++D G H+P
Sbjct: 272 RMYFRNFATAEAAEDEELAIFLKNDDILAKEARLKIKRVDPTLDMEADAGDDYIHLPDHG 331
Query: 275 VLRPGVVTILENDGKQNKIFVSSGTITVNDDSSVQVLAEEAHPLESIDRSAAQEALSKAQ 454
++R G ++NDG+ + +S +N ++V VL + +E D EA+++++
Sbjct: 332 IIRDGSKETIDNDGELARRTLSQ---DLNRHAAV-VLEGRSSDVELTDTKTVAEAIARSK 387
Query: 455 SEFNSAS 475
E S+S
Sbjct: 388 KEPPSSS 394
>07_03_1343 -
25905475-25905678,25907025-25907167,25907273-25907366,
25907526-25907687,25907884-25907952,25908631-25908843,
25909054-25909113,25909294-25909382,25909745-25910063
Length = 450
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 254 KHVPTLAVLRPGVVTILENDGKQNKIF 334
KH P + R G +++ E DGK+NK++
Sbjct: 233 KHPPGDEIYRSGTLSMFEVDGKKNKVY 259
>04_01_0542 -
7005972-7007443,7008568-7008766,7008780-7008855,
7009615-7009925
Length = 685
Score = 29.1 bits (62), Expect = 3.1
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +2
Query: 278 LRPGVVTILENDGKQNKIFVSS--GTITVNDDSSVQVLAEEAHPLESIDRSAAQEALSKA 451
LR G VT D + N VS+ G +TV DDS+V+ AEE P + S+ + ++KA
Sbjct: 426 LRGGSVT----DSQLNSHCVSAIAGLLTVVDDSAVEQQAEEVLPTICV-ASSLETVMNKA 480
Query: 452 QSE 460
E
Sbjct: 481 PEE 483
>11_05_0074 +
18850567-18851095,18851249-18851274,18851353-18851645,
18851898-18852699,18852874-18853022,18853105-18853393,
18853479-18853517,18853623-18853661
Length = 721
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +2
Query: 200 VVKQIDVPSFSGAFGILPKHVPTLAVLRPGVVTI--LEND--GKQNKIF 334
++ Q D F G + KH P +A L P VVTI L+N+ G N I+
Sbjct: 533 ILGQHDGKPFLGPTNYIVKHAPEVAFLDPQVVTITNLQNNRQGMVNYIY 581
>09_01_0069 - 1010888-1011226,1011412-1011600
Length = 175
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -1
Query: 352 NCARRYEDF-ILFPIIFKNCNNTRSKNSQGR 263
NC+R ++ +LFP K+ TR KN +GR
Sbjct: 136 NCSRVFDPLDLLFPFSPKSERKTRDKNDRGR 166
>04_03_0558 +
17111138-17111996,17112474-17112564,17112647-17113268,
17113378-17113457,17113871-17113937,17114138-17114263,
17114333-17114415,17115334-17115777,17115834-17115927,
17116038-17116124,17116474-17116594,17116671-17116709,
17116828-17116997
Length = 960
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -1
Query: 208 FDNLFVIKDLITRSEGQCHFVTFGSICIVTYLKPTSYISDYTTECQ 71
FD + + R E C +TFG I KP +T+EC+
Sbjct: 591 FDRICLTNQRTNRYELHCQMITFGK-AICRKSKPNCGACPFTSECK 635
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,454,693
Number of Sequences: 37544
Number of extensions: 235686
Number of successful extensions: 531
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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