Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0321
         (640 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9666| Best HMM Match : No HMM Matches (HMM E-Value=.)              120   8e-28
SB_13949| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.20 
SB_35671| Best HMM Match : zf-C3HC4 (HMM E-Value=0.01)                 31   0.60 
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)          30   1.4  
SB_53634| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_9666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score =  120 bits (290), Expect = 8e-28
 Identities = 59/109 (54%), Positives = 77/109 (70%)
 Frame = +2

Query: 152 MALTFAAGNKVFYDKQVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVVTILENDGKQNKI 331
           M+LTFA+  + FY    V Q+DV + SG+FGILP HVPTL V++PGV+T+ E      K 
Sbjct: 35  MSLTFASPTEGFYRDAAVTQVDVSTTSGSFGILPSHVPTLQVIKPGVLTVYEG-STSTKY 93

Query: 332 FVSSGTITVNDDSSVQVLAEEAHPLESIDRSAAQEALSKAQSEFNSASN 478
           FVSSG +TVN DS+VQ+LAEEAHPL+  D  AA + L +AQ E + AS+
Sbjct: 94  FVSSGAVTVNADSTVQILAEEAHPLDRFDVQAANKQLEEAQQELSGASS 142


>SB_13949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 867

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 24/78 (30%), Positives = 38/78 (48%)
 Frame = +2

Query: 227 FSGAFGILPKHVPTLAVLRPGVVTILENDGKQNKIFVSSGTITVNDDSSVQVLAEEAHPL 406
           +S  FG  PKH  T AVL   VV  ++   +  +    S      DD S  ++ E +H  
Sbjct: 375 YSNQFGFRPKHSTTHAVL--SVVDKIQKAIELGQFSPKSDVGEDTDDISNSLVLEPSH-- 430

Query: 407 ESIDRSAAQEALSKAQSE 460
           E+++R AA++A   A  +
Sbjct: 431 ENMERQAAEDAAEDAAED 448


>SB_35671| Best HMM Match : zf-C3HC4 (HMM E-Value=0.01)
          Length = 527

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 19/46 (41%), Positives = 24/46 (52%)
 Frame = -3

Query: 407 PEGEPLRLKPELRSHHLL*LCQTIRRFYSVSHHFQEL*QHQV*EQP 270
           PEGE L +K +LR          +RRFY + HH  E+  HQ  E P
Sbjct: 472 PEGEALAMKADLRLPWFA--LGKLRRFYMLEHHVVEI--HQALEIP 513


>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
          Length = 1494

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -1

Query: 190 IKDLITRSEGQCHFVTFGSICIVTYLKPTSYISDYTTECQCHSDYLS 50
           + D +T S     F+T  S  +  +L  +S +SD+ T C   SD+L+
Sbjct: 414 LSDFLTSSSSLSDFLTSSS-SLSDFLTSSSSLSDFLTSCSSLSDFLT 459


>SB_53634| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 91 DYTTECQCHSDYLSFLIQIITNGNLLRQ 8
          D +T  QC SD + FL  ++    LLR+
Sbjct: 5  DLSTPSQCSSDIVDFLEDVLETAELLRE 32


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,228,763
Number of Sequences: 59808
Number of extensions: 299877
Number of successful extensions: 769
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)