Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0321
         (640 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            25   2.7  
AY994089-1|AAX86002.1|  267|Anopheles gambiae hyp37.7-like precu...    24   3.5  
AJ441131-1|CAD29630.1|  567|Anopheles gambiae putative chitin bi...    24   4.7  
AJ439060-17|CAD27768.1|  568|Anopheles gambiae putative chitin b...    24   4.7  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    23   6.2  

>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 431  VQHYGQCSPEGEPLRL 384
            V +Y Q  P+G PLRL
Sbjct: 1142 VPYYAQSQPQGSPLRL 1157


>AY994089-1|AAX86002.1|  267|Anopheles gambiae hyp37.7-like
           precursor protein.
          Length = 267

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 35  NLNKKRKIIRMALAFRGVIRNVARR 109
           N   K  +I+++ AFRG++   AR+
Sbjct: 168 NGTNKDTVIKLSNAFRGIVEKYARK 192


>AJ441131-1|CAD29630.1|  567|Anopheles gambiae putative chitin
           binding protein protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -3

Query: 437 PPVQHYGQCSPEGEPLRLKPE-LRSHHLL*LCQT 339
           PP +   + +PE EP+R  P  LR +  L   QT
Sbjct: 120 PPFRPIPKPTPEAEPVRFDPSVLRRNFALKTAQT 153


>AJ439060-17|CAD27768.1|  568|Anopheles gambiae putative chitin
           binding protein protein.
          Length = 568

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -3

Query: 437 PPVQHYGQCSPEGEPLRLKPE-LRSHHLL*LCQT 339
           PP +   + +PE EP+R  P  LR +  L   QT
Sbjct: 125 PPFRPIPKPTPEAEPVRFDPSVLRRNFALKTAQT 158


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 6.2
 Identities = 24/105 (22%), Positives = 45/105 (42%)
 Frame = +2

Query: 38  LNKKRKIIRMALAFRGVIRNVARRLQVRNYADAPKGDEMALTFAAGNKVFYDKQVVKQID 217
           L+   K++R  +    V+R V  +L++    D    +++  T     + +YD ++  +  
Sbjct: 36  LSNYNKLVRPVVNTSDVLR-VCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLRWE-- 92

Query: 218 VPSFSGAFGILPKHVPTLAVLRPGVVTILENDGKQNKIFVSSGTI 352
            P   G  G+   HVP+  + RP +V     DG       +  TI
Sbjct: 93  -PKEYG--GVQMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATI 134


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 554,782
Number of Sequences: 2352
Number of extensions: 9960
Number of successful extensions: 23
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 62723250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)