Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0321
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23170-1|AAC46699.1|  163|Caenorhabditis elegans Hypothetical pr...   111   4e-25
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p...    31   0.70 
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr...    31   0.70 
Z75547-8|CAA99898.1|  126|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U23524-2|ABD63241.1|  303|Caenorhabditis elegans Mirp k channel ...    29   2.8  
U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AL117202-23|CAB97239.2| 1428|Caenorhabditis elegans Hypothetical...    28   6.5  
AC025724-4|AAP31423.1|  612|Caenorhabditis elegans Hypothetical ...    28   6.5  
AC025724-3|AAG23379.2|  662|Caenorhabditis elegans Hypothetical ...    28   6.5  
AC084158-14|AAK68557.2|  207|Caenorhabditis elegans Hypothetical...    27   8.6  
AC084158-13|AAK68570.1|  337|Caenorhabditis elegans Hypothetical...    27   8.6  

>U23170-1|AAC46699.1|  163|Caenorhabditis elegans Hypothetical
           protein F58F12.1 protein.
          Length = 163

 Score =  111 bits (267), Expect = 4e-25
 Identities = 52/103 (50%), Positives = 72/103 (69%)
 Frame = +2

Query: 146 DEMALTFAAGNKVFYDKQVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVVTILENDGKQN 325
           +E+ LTFA+ +   +   VVKQ+DVP+ +G  G+L  HVPT+ VL+PGVV++  N+G   
Sbjct: 29  EELRLTFASPDTAVFSNAVVKQVDVPTLAGMVGVLANHVPTIGVLKPGVVSVTTNEGTVQ 88

Query: 326 KIFVSSGTITVNDDSSVQVLAEEAHPLESIDRSAAQEALSKAQ 454
           ++FVSSGT++VN D S QVLAEE   +E ID SAA+  L  AQ
Sbjct: 89  RLFVSSGTLSVNIDGSCQVLAEEVLKVEEIDESAARAELDAAQ 131


>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
           protein F11C3.3 protein.
          Length = 1963

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +2

Query: 134 APKGDEMALTFAAGNKVFYDKQVVKQIDVPSF 229
           A KGD++ +  A GN+V   K++V++++ P F
Sbjct: 49  ATKGDQVTIVTARGNEVTLKKELVQEMNPPKF 80


>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical
           protein F11C3.3 protein.
          Length = 1963

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +2

Query: 134 APKGDEMALTFAAGNKVFYDKQVVKQIDVPSF 229
           A KGD++ +  A GN+V   K++V++++ P F
Sbjct: 49  ATKGDQVTIVTARGNEVTLKKELVQEMNPPKF 80


>Z75547-8|CAA99898.1|  126|Caenorhabditis elegans Hypothetical
           protein R11D1.8 protein.
          Length = 126

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 23/100 (23%), Positives = 49/100 (49%)
 Frame = +2

Query: 173 GNKVFYDKQVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVVTILENDGKQNKIFVSSGTI 352
           G +   +K  +K+++ P +SG   +  KH   ++    GVV   +N+  +    V++ T+
Sbjct: 24  GKRFSTEKFNLKKVNSPKYSG---LANKHAIDVSAAAKGVVVSTKNEKGRPAKAVTTSTL 80

Query: 353 TVNDDSSVQVLAEEAHPLESIDRSAAQEALSKAQSEFNSA 472
           +    +SV+ LA+ A      ++ A + A +  +S+   A
Sbjct: 81  SKTPVASVRRLAKNA-GFNKFNKLAQRRAAAIVRSQVKKA 119


>U23524-2|ABD63241.1|  303|Caenorhabditis elegans Mirp k channel
           accessory subunitprotein 1, isoform b protein.
          Length = 303

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 343 RRYEDFILFPIIFKNCNNTRSKNSQ 269
           RR++  +  P+++ N NN  SKN++
Sbjct: 274 RRFDVTVFLPVVYNNVNNYNSKNAE 298


>U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical
           protein ZK430.1 protein.
          Length = 1650

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 332 FVSSGTITVNDDSSVQVLAEEAHPLESIDRSAAQEALSKAQS 457
           F S        + S+++++EEA   + I  +A+++A   AQS
Sbjct: 459 FASEAVAATQSEESIEIISEEAPSSKKIKLTASEKAQKLAQS 500


>AL117202-23|CAB97239.2| 1428|Caenorhabditis elegans Hypothetical
           protein Y47D3A.29 protein.
          Length = 1428

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +2

Query: 188 YDKQVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVVTILENDGKQNK 328
           Y K   +Q+ VP  +   G+LP+ +  L   R  V ++++++  + K
Sbjct: 859 YSKDSDEQLSVPQSTDIEGVLPREIRKLVECRRDVKSLMKSERNEAK 905


>AC025724-4|AAP31423.1|  612|Caenorhabditis elegans Hypothetical
           protein Y67D8C.3b protein.
          Length = 612

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -3

Query: 176 YPQRRSMPFRHLWEHLHSYVLEADE---LHF*LHHGMPV 69
           YP RR  PF H  EH +S V   +E     F L +G+P+
Sbjct: 57  YPYRRVEPFEHTSEHGYSSVERYNEEVATRFLLGNGLPL 95


>AC025724-3|AAG23379.2|  662|Caenorhabditis elegans Hypothetical
           protein Y67D8C.3a protein.
          Length = 662

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -3

Query: 176 YPQRRSMPFRHLWEHLHSYVLEADE---LHF*LHHGMPV 69
           YP RR  PF H  EH +S V   +E     F L +G+P+
Sbjct: 107 YPYRRVEPFEHTSEHGYSSVERYNEEVATRFLLGNGLPL 145


>AC084158-14|AAK68557.2|  207|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.13 protein.
          Length = 207

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 106 TSYISDYTTECQCHSDYLSFL 44
           T +   YT +CQC+S  L FL
Sbjct: 100 TDFCKKYTNDCQCYSMRLGFL 120


>AC084158-13|AAK68570.1|  337|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.25 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 106 TSYISDYTTECQCHSDYLSFL 44
           T +   YT +CQC+S  L FL
Sbjct: 170 TDFCKKYTNDCQCYSMRLGFL 190


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,250,328
Number of Sequences: 27780
Number of extensions: 228735
Number of successful extensions: 522
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)