Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0321
         (640 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47030.1 68418.m05796 ATP synthase delta' chain, mitochondria...    69   3e-12
At5g17660.1 68418.m02070 expressed protein contains Pfam profile...    30   1.5  
At5g09740.1 68418.m01128 histone acetyltransferase, putative sim...    30   1.5  
At5g17490.1 68418.m02052 gibberellin response modulator, putativ...    28   6.0  
At5g64610.1 68418.m08119 histone acetyltransferase, putative sim...    27   7.9  

>At5g47030.1 68418.m05796 ATP synthase delta' chain, mitochondrial
           identical to SP|Q96252 ATP synthase delta' chain,
           mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
           thaliana}; contains Pfam profile PF02823: ATP synthase,
           Delta/Epsilon chain, beta-sandwich domain
          Length = 203

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 34/91 (37%), Positives = 58/91 (63%)
 Frame = +2

Query: 203 VKQIDVPSFSGAFGILPKHVPTLAVLRPGVVTILENDGKQNKIFVSSGTITVNDDSSVQV 382
           V  + +P+ +G  G+LP HVPT+A L+PG++++ E    + K F+SSG   ++ +S   +
Sbjct: 90  VDMVIIPASTGQMGVLPGHVPTIAELKPGIMSVHEGTDVK-KYFLSSGFAFLHANSVADI 148

Query: 383 LAEEAHPLESIDRSAAQEALSKAQSEFNSAS 475
           +A EA PL+ ID S  Q+ L++ Q +  SA+
Sbjct: 149 IAVEAVPLDHIDPSQVQKGLAEFQQKLASAT 179


>At5g17660.1 68418.m02070 expressed protein contains Pfam profile
           PF02390: Putative methyltransferase
          Length = 312

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 20/55 (36%), Positives = 29/55 (52%)
 Frame = +2

Query: 254 KHVPTLAVLRPGVVTILENDGKQNKIFVSSGTITVNDDSSVQVLAEEAHPLESID 418
           +H     V +P V +IL+N     KIFV S  + V  D   Q L EE++ L+ +D
Sbjct: 214 RHQKRRVVQKPLVNSILQNLKPGGKIFVQSDVLDVAQDMRDQ-LDEESNVLQHMD 267


>At5g09740.1 68418.m01128 histone acetyltransferase, putative
           similar to histone acetyltransferase [Homo sapiens]
           gi|8317213|gb|AAF72665
          Length = 445

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 254 KHVPTLAVLRPGVVTILENDGKQNKIFVSS 343
           KH P   + R G +++ E DGK+NK++  +
Sbjct: 228 KHPPGDEIYRSGTLSMFEVDGKKNKVYAQN 257


>At5g17490.1 68418.m02052 gibberellin response modulator, putative /
           gibberellin-responsive modulator, putative putative
           member of the VHIID domain transcription factor family
           RGAL - Arabidopsis thaliana, EMBL:AJ224957
          Length = 523

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +2

Query: 242 GILPKHVPTLAVLRPGVVTILENDGKQN-KIFVSSGTITVNDDSSVQVLAEEAHPLESID 418
           G + K + T+  ++PG+VT++E +   N  +F+      ++  SS+    E+   + S D
Sbjct: 364 GSIEKLLATVKAVKPGLVTVVEQEANHNGDVFLDRFNEALHYYSSLFDSLEDGVVIPSQD 423

Query: 419 RSAAQEALSK 448
           R  ++  L +
Sbjct: 424 RVMSEVYLGR 433


>At5g64610.1 68418.m08119 histone acetyltransferase, putative
           similar to histone acetyltransferase [Homo sapiens]
           gi|8317213|gb|AAF72665
          Length = 445

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 254 KHVPTLAVLRPGVVTILENDGKQNKIFVSS 343
           KH P   + R   +++ E DGK+NK++  +
Sbjct: 228 KHPPGDEIYRSSTLSMFEVDGKKNKVYAQN 257


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,197,328
Number of Sequences: 28952
Number of extensions: 199324
Number of successful extensions: 429
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)