Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0319
(690 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0117 - 12486672-12486818,12487438-12487488,12487583-124877... 307 5e-84
10_02_0022 - 4290708-4290788,4291254-4291305,4291396-4291484,429... 285 2e-77
06_01_0262 - 1930552-1930632,1931096-1931152,1931236-1931287,193... 258 2e-69
03_02_0365 - 7816966-7817046,7817441-7817492,7817590-7817678,781... 122 1e-55
03_02_0477 - 8770905-8770985,8771164-8771361,8771939-8772025,877... 183 1e-46
07_03_0627 - 20061951-20062391,20062912-20062960,20063386-200638... 29 3.5
01_01_0796 + 6190931-6192745 29 4.6
06_01_0598 + 4324129-4326150 28 6.1
>09_03_0117 -
12486672-12486818,12487438-12487488,12487583-12487729,
12488037-12488354,12488450-12488604,12488941-12489248,
12490644-12491038
Length = 506
Score = 307 bits (754), Expect = 5e-84
Identities = 150/230 (65%), Positives = 181/230 (78%), Gaps = 1/230 (0%)
Frame = +1
Query: 4 QIFDSRGNPTVEVDLVTELG-LFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKN 180
QI DSRGNPTVEVDLV G L R+AVPSGASTG++EALELRD + Y GKGVL A++N
Sbjct: 58 QIVDSRGNPTVEVDLVAGDGRLHRSAVPSGASTGIYEALELRDGDGAAYGGKGVLNAVRN 117
Query: 181 INELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVSLXXXXXXXXXXNV 360
INE+IAP+L ++V Q ++D +ML +DGT NKSKLGANAILGVSL V
Sbjct: 118 INEVIAPKLV--GVDVRNQSDVDAIMLDIDGTPNKSKLGANAILGVSLSVCRAGAGAKEV 175
Query: 361 PLYKHLADLAGNNDIVLPVPAFNVINGGSHAGNKLAMQEFMIFPTGASTFSEAMRMGSEV 540
PLYKH+ +LAG ++V+PVPAFNVINGGSHAGN LAMQEFM+ P GAS+FSEA+RMGSEV
Sbjct: 176 PLYKHIQELAGTKELVMPVPAFNVINGGSHAGNNLAMQEFMLLPVGASSFSEALRMGSEV 235
Query: 541 YHHLKKIIKEKFGLDSTAVGDESGFAPNIQNNKDALYLIQDAIQKAGYAG 690
YH LK IIK K+G D+ VGDE GFAPN+Q+N++ L L+ DAI+KAGY+G
Sbjct: 236 YHALKGIIKAKYGQDACNVGDEGGFAPNVQDNREGLVLLMDAIEKAGYSG 285
>10_02_0022 -
4290708-4290788,4291254-4291305,4291396-4291484,
4291565-4291615,4291699-4291893,4292010-4292090,
4292190-4292252,4292480-4292554,4292630-4292710,
4292784-4292888,4292977-4293057,4293156-4293242,
4293322-4293369,4293923-4293987,4294109-4294172,
4294828-4294896
Length = 428
Score = 285 bits (699), Expect = 2e-77
Identities = 150/237 (63%), Positives = 178/237 (75%), Gaps = 8/237 (3%)
Frame = +1
Query: 4 QIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKN 180
QIFDSRGNPTVEVD+ G F RAAVPSGASTGV+EALELRD S+Y GKGV A+ N
Sbjct: 12 QIFDSRGNPTVEVDVCCSDGTFARAAVPSGASTGVYEALELRDG-GSDYLGKGVSKAVDN 70
Query: 181 INELIAPELTKANLEVTQQREIDELMLK-LDGTEN-----KSKLGANAILGVSLXXXXXX 342
+N +IAP L + T Q E+D M++ LDGT+N K KLGANAIL VSL
Sbjct: 71 VNSVIAPALI--GKDPTSQAELDNFMVQQLDGTKNEWGWCKQKLGANAILAVSLAICKAG 128
Query: 343 XXXXNVPLYKHLADLAGNNDIVLPVPAFNVINGGSHAGNKLAMQ-EFMIFPTGASTFSEA 519
+PLY+H+A+LAGN +VLPVPAFNVINGGSHAGNKLAMQ EFMI PTGA++F EA
Sbjct: 129 AIIKKIPLYQHIANLAGNKQLVLPVPAFNVINGGSHAGNKLAMQAEFMILPTGAASFKEA 188
Query: 520 MRMGSEVYHHLKKIIKEKFGLDSTAVGDESGFAPNIQNNKDALYLIQDAIQKAGYAG 690
M+MG EVYH+LK +IK+K+G D+T VGDE GFAPNIQ NK+ L L++ AI+KAGY G
Sbjct: 189 MKMGVEVYHNLKSVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIEKAGYTG 245
>06_01_0262 -
1930552-1930632,1931096-1931152,1931236-1931287,
1931373-1931461,1931551-1931601,1931696-1931890,
1932015-1932095,1932205-1932267,1933045-1933119,
1933194-1933352,1933353-1933463,1933536-1933616,
1933721-1933807,1933920-1933967,1934357-1934421,
1935002-1935065,1935220-1935288
Length = 475
Score = 258 bits (633), Expect = 2e-69
Identities = 151/265 (56%), Positives = 176/265 (66%), Gaps = 36/265 (13%)
Frame = +1
Query: 4 QIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKN 180
QIFDSRGNPTVEVD+ G F R AVPSGASTG++EALELRD S+Y GKGVL A+ N
Sbjct: 12 QIFDSRGNPTVEVDVGLSDGSFARGAVPSGASTGIYEALELRDG-GSDYLGKGVLKAVSN 70
Query: 181 INELIAPELTKANLEVTQQREIDELMLK-LDGTEN-----KSKLGANAILGVSLXXXXXX 342
+N +I P L + T+Q +ID M++ LDGT N K KLGANAIL VSL
Sbjct: 71 VNTIIGPALI--GKDPTEQVDIDNFMVQQLDGTSNNWGWCKQKLGANAILAVSLAVCKAG 128
Query: 343 XXXXNVPLYK---HLADLAGNNDIVLPVPAFNVINGGSHAGNKLAM-------------- 471
+PLY+ H+A+LAGN +VLPVPAFNVINGGSHAGNKLAM
Sbjct: 129 AMVKKIPLYQKLQHIANLAGNKTLVLPVPAFNVINGGSHAGNKLAMQVKYCLNNKTMSMH 188
Query: 472 ------------QEFMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDESGF 615
QEFMI PTGAS+F EAM+MG EVYHHLK IIK+K+G D+T VGDE GF
Sbjct: 189 DSVIFSAHLAAVQEFMILPTGASSFKEAMKMGVEVYHHLKSIIKKKYGQDATNVGDEGGF 248
Query: 616 APNIQNNKDALYLIQDAIQKAGYAG 690
APNIQ NK+ L L++ AI KAGY G
Sbjct: 249 APNIQENKEGLELLKAAIAKAGYTG 273
>03_02_0365 -
7816966-7817046,7817441-7817492,7817590-7817678,
7817762-7817854,7817900-7818094,7818172-7818249,
7818353-7818415,7818806-7818880,7818958-7819038,
7819329-7819409,7819516-7819602,7819682-7819729,
7820317-7820381,7820566-7820629,7821254-7821322
Length = 406
Score = 122 bits (293), Expect(2) = 1e-55
Identities = 73/130 (56%), Positives = 86/130 (66%), Gaps = 7/130 (5%)
Frame = +1
Query: 4 QIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKN 180
QIFDSRGNPTVEVD+ G F RAAVPSGASTGV+EALELRD S+Y GKGVL A+ N
Sbjct: 12 QIFDSRGNPTVEVDICCSDGTFARAAVPSGASTGVYEALELRDG-GSDYLGKGVLKAVDN 70
Query: 181 INELIAPELTKANLEVTQQREIDELML-KLDGTEN-----KSKLGANAILGVSLXXXXXX 342
+N +I P L + T+Q ID M+ +LDGT+N K KLGANAIL VSL
Sbjct: 71 VNSIIGPAL--IGKDPTEQTVIDNFMVQQLDGTKNEWGWCKQKLGANAILAVSLALCKAG 128
Query: 343 XXXXNVPLYK 372
+PLY+
Sbjct: 129 AIIKKIPLYQ 138
Score = 112 bits (270), Expect(2) = 1e-55
Identities = 50/73 (68%), Positives = 61/73 (83%)
Frame = +1
Query: 472 QEFMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDESGFAPNIQNNKDALY 651
QEFMI PTGAS+F EAM+MG EVYH+LK +IK+K+G D+T VGDE GFAPNIQ NK+ L
Sbjct: 138 QEFMILPTGASSFKEAMKMGVEVYHNLKSVIKKKYGQDATNVGDEGGFAPNIQENKEGLE 197
Query: 652 LIQDAIQKAGYAG 690
L++ AI+KAGY G
Sbjct: 198 LLKTAIEKAGYTG 210
>03_02_0477 -
8770905-8770985,8771164-8771361,8771939-8772025,
8772094-8772179,8772270-8772368,8772431-8772551,
8773251-8773331,8773643-8773723,8773972-8774088,
8774185-8774256,8774621-8775055
Length = 485
Score = 183 bits (445), Expect = 1e-46
Identities = 91/208 (43%), Positives = 127/208 (61%)
Frame = +1
Query: 4 QIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNI 183
QI D RG P VEV L T + RA+ + + A +RD K + + V A++ I
Sbjct: 54 QILDGRGEPAVEVSLHTNKAVHRASAAAADAPEGAAADAVRDAEKRKLLARAVADAVRVI 113
Query: 184 NELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVSLXXXXXXXXXXNVP 363
N+ ++ L ++ QQ +ID+ ++ LD +K+++G N++L VS+ VP
Sbjct: 114 NDKVSEALV--GMDPQQQSQIDQAIMDLDKAHHKAEIGVNSMLAVSIAACKAGAAEKEVP 171
Query: 364 LYKHLADLAGNNDIVLPVPAFNVINGGSHAGNKLAMQEFMIFPTGASTFSEAMRMGSEVY 543
LYKH+A+L G + LP+PA VINGG+HAGN L +QE MI P GA F EAM+MGSE Y
Sbjct: 172 LYKHIAELVGKSATTLPIPAITVINGGTHAGNSLPIQEIMILPVGAKNFEEAMQMGSETY 231
Query: 544 HHLKKIIKEKFGLDSTAVGDESGFAPNI 627
HHLK II EK+G +S +GD+ GFAPNI
Sbjct: 232 HHLKDIILEKYGSNSCNIGDDGGFAPNI 259
>07_03_0627 - 20061951-20062391,20062912-20062960,20063386-20063851,
20063933-20064139,20064267-20064405,20065146-20065282,
20065414-20065657,20065808-20065969,20066049-20066167,
20066240-20066314,20066327-20066500,20066607-20066769,
20067211-20067420,20067515-20067668,20067761-20067839,
20067999-20068146,20068501-20068671,20068771-20069385
Length = 1250
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 61 GLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINELIAPE 204
GL +A + SGA + A+E D+ YHG V +++N +IA +
Sbjct: 1124 GLVKAFMDSGAKAVISSAMEPPDSQSIVYHGMEVNGSLENGKFVIADD 1171
>01_01_0796 + 6190931-6192745
Length = 604
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/75 (22%), Positives = 36/75 (48%)
Frame = +1
Query: 61 GLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQQR 240
GLF+ A TG A+ + D +S++H G T ++ ++ ++ +A E
Sbjct: 29 GLFKCASDLSILTGASVAVVIEDQNRSKFHAVGTPTVQAVVDAALSSDVEEAAAEARPVA 88
Query: 241 EIDELMLKLDGTENK 285
+ ++LM ++ E +
Sbjct: 89 D-EQLMERIAPLERE 102
>06_01_0598 + 4324129-4326150
Length = 673
Score = 28.3 bits (60), Expect = 6.1
Identities = 21/72 (29%), Positives = 35/72 (48%)
Frame = -1
Query: 651 IKSILVVLYVWCETTFITNSRRVQSKLLLNDLFQMVVHF*THPHGFTEGGRPCRENHEFL 472
I + L+ +Y CE + ++RRV +L D+ G+T+ RP FL
Sbjct: 260 ISASLLDMYAKCEK--VEDARRVFDELEFVDIVLWTAMI----VGYTQNKRPLDALQLFL 313
Query: 471 HGKFISSM*SSI 436
H KF+S + +S+
Sbjct: 314 HKKFVSIVPNSV 325
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.134 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,166,412
Number of Sequences: 37544
Number of extensions: 385901
Number of successful extensions: 642
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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