Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0319
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17335| Best HMM Match : Enolase_C (HMM E-Value=0)                  136   2e-32
SB_29862| Best HMM Match : Enolase_N (HMM E-Value=6e-20)              100   1e-21
SB_28893| Best HMM Match : Enolase_C (HMM E-Value=5.6e-07)             97   2e-20
SB_27495| Best HMM Match : VWA (HMM E-Value=0)                         31   0.88 
SB_30236| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42)            29   4.7  
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)                 28   6.2  
SB_18551| Best HMM Match : RNA_pol_Rpc82 (HMM E-Value=0.69)            28   6.2  
SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_9773| Best HMM Match : TPR_2 (HMM E-Value=3.2e-06)                  28   6.2  
SB_825| Best HMM Match : EGF (HMM E-Value=5.6e-08)                     28   8.2  

>SB_17335| Best HMM Match : Enolase_C (HMM E-Value=0)
          Length = 284

 Score =  136 bits (329), Expect = 2e-32
 Identities = 58/76 (76%), Positives = 70/76 (92%)
 Frame = +1

Query: 358 VPLYKHLADLAGNNDIVLPVPAFNVINGGSHAGNKLAMQEFMIFPTGASTFSEAMRMGSE 537
           VPLYK++A LAGNN ++LPVPAFNVINGGSHAGNKLAMQEFM+ PTGAS F EAMRMG+E
Sbjct: 26  VPLYKYIAGLAGNNQVILPVPAFNVINGGSHAGNKLAMQEFMLLPTGASNFREAMRMGAE 85

Query: 538 VYHHLKKIIKEKFGLD 585
           +Y +LKK++KEK+G+D
Sbjct: 86  IYQNLKKVVKEKYGID 101


>SB_29862| Best HMM Match : Enolase_N (HMM E-Value=6e-20)
          Length = 115

 Score =  100 bits (240), Expect = 1e-21
 Identities = 46/75 (61%), Positives = 58/75 (77%)
 Frame = +1

Query: 61  GLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQQR 240
           G FRAAVPSGASTG++EALELRD   S++ GKGV  A+ N+N +I P L   N++VT Q 
Sbjct: 40  GTFRAAVPSGASTGIYEALELRDKDASKFLGKGVSQAVNNVNTIIGPALVSKNVDVTAQE 99

Query: 241 EIDELMLKLDGTENK 285
           +ID +ML+LDGTENK
Sbjct: 100 DIDNMMLQLDGTENK 114


>SB_28893| Best HMM Match : Enolase_C (HMM E-Value=5.6e-07)
          Length = 133

 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 46/86 (53%), Positives = 64/86 (74%)
 Frame = +1

Query: 427 NVINGGSHAGNKLAMQEFMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDE 606
           N++NGG+HA + + +QEFMI P GA +F +A   G+ VYH LKK++K+K GL +T +GDE
Sbjct: 2   NILNGGAHADSDVDIQEFMIAPIGAESFKQAYEWGAAVYHSLKKVLKDK-GL-ATGLGDE 59

Query: 607 SGFAPNIQNNKDALYLIQDAIQKAGY 684
            GFAPN+ +N  AL LI DAI+ AG+
Sbjct: 60  GGFAPNLPSNAAALDLILDAIKAAGF 85


>SB_27495| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1064

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = -1

Query: 309 DSISTQFGFVLSAIQLKHEFINLSLLGYFKVGFGKFRSNEFID-IFDCGQNSLAMIFTLD 133
           + + T F      ++ +H F    + GY + GF KFRS + +D + D  + +      +D
Sbjct: 633 EKLCTGFDVAERQLRKQHSFWFNDVCGYNQKGFRKFRSEQELDELLDKIEKTQDPQRRVD 692

Query: 132 VISQF--KSFMNTSGGTR 85
              +F  K F +  GGTR
Sbjct: 693 KTFKFASKEFFSMEGGTR 710


>SB_30236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 20/65 (30%), Positives = 28/65 (43%)
 Frame = -2

Query: 587 ESNPNFSLMIFFKWWYTSEPILMASLKVDAPVGKIMNSCMASLFPACDPPLITLKAGTGR 408
           ES   F  +I + W+  S  IL  + K D    KIM S +   FP  D P    +A    
Sbjct: 244 ESKALFRTIITYPWFQNSSIILFLNKK-DLLEEKIMFSHLVEYFPEFDGPQCDAQAAREF 302

Query: 407 TISLF 393
            + +F
Sbjct: 303 ILKMF 307


>SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42)
          Length = 870

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +1

Query: 166 TAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKS 288
           TA KN+ +  A ELT  N + TQ+ +  +L   L  TEN++
Sbjct: 679 TAKKNLEKARAAELTAVNQQATQREQ--QLTTLLQETENRN 717


>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
          Length = 892

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 671 WIAS*IR*RASLLFCMFGAKPLSSPTAVESNPNFSLMIFFK 549
           W +  ++ R  LL C F   P +SP+A+E   N  L +F K
Sbjct: 40  WASVKLKGRKELLLCSFYRVPNNSPSALEVLSNAILDVFNK 80


>SB_18551| Best HMM Match : RNA_pol_Rpc82 (HMM E-Value=0.69)
          Length = 348

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 130 NIKSEYHGKGVLTAIKNINELIAPELTK--ANLEVTQQRE 243
           N+K+E+ G+    AI ++ EL+ P   +    L++TQ R+
Sbjct: 219 NLKAEHGGEAAADAISDLQELVTPAEREMLMKLKITQARQ 258


>SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1676

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 671 WIAS*IR*RASLLFCMFGAKPLSSPTAVESNPNFSLMIFFK 549
           W +  ++ R  LL C F   P +SP+A+E   N  L +F K
Sbjct: 292 WASVKLKGRKELLLCSFYRVPNNSPSALEVLSNAILDVFNK 332


>SB_9773| Best HMM Match : TPR_2 (HMM E-Value=3.2e-06)
          Length = 553

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 367 YKHLADLAGNNDIVLPVPAFNVING-GSHAGNKLAMQE 477
           Y HL+ +   +D+ LPV  +N+ +G G   G+ +A+ E
Sbjct: 268 YLHLSRVKDKSDLCLPVTVYNMASGAGFVVGDAIAIPE 305


>SB_825| Best HMM Match : EGF (HMM E-Value=5.6e-08)
          Length = 316

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +1

Query: 166 TAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAIL 312
           T + +I E  A E+T+    V  +   D L+++++G EN+S+   N I+
Sbjct: 230 TGVGSIEE-DAAEITERLETVATRETTDLLLIRVEGLENRSRRNNNIII 277


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.134    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,452,437
Number of Sequences: 59808
Number of extensions: 429175
Number of successful extensions: 726
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)