Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0319
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68318-8|CAH10783.1|  465|Caenorhabditis elegans Hypothetical pr...   330   4e-91
Z68318-2|CAA92692.1|  434|Caenorhabditis elegans Hypothetical pr...   330   4e-91
Z68318-3|CAD57704.1|  337|Caenorhabditis elegans Hypothetical pr...   172   2e-43
U56864-1|AAB04059.1|  355|Caenorhabditis elegans EGL-30 protein.       28   5.5  
AY008139-1|AAG32092.1|  355|Caenorhabditis elegans heterotrimeri...    28   5.5  
AF003739-2|AAM15593.1|  303|Caenorhabditis elegans Egg laying de...    28   5.5  
AF003739-1|AAB58071.1|  355|Caenorhabditis elegans Egg laying de...    28   5.5  
Z81527-14|CAB04278.2|  506|Caenorhabditis elegans Hypothetical p...    28   7.2  
Z79753-8|CAB02089.2|  506|Caenorhabditis elegans Hypothetical pr...    28   7.2  

>Z68318-8|CAH10783.1|  465|Caenorhabditis elegans Hypothetical
           protein T21B10.2c protein.
          Length = 465

 Score =  330 bits (812), Expect = 4e-91
 Identities = 159/229 (69%), Positives = 184/229 (80%)
 Frame = +1

Query: 4   QIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNI 183
           QI+DSRGNPTVEVDL TE G+FRAAVPSGASTGVHEALELRD  K+ + GKGVL A+ NI
Sbjct: 41  QIYDSRGNPTVEVDLFTEKGVFRAAVPSGASTGVHEALELRDGDKAVHLGKGVLKAVSNI 100

Query: 184 NELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVSLXXXXXXXXXXNVP 363
           NE IAP L     +VT Q++ID+ M+ LDG+ENK  LGANAILGVSL           +P
Sbjct: 101 NEKIAPALIAKGFDVTAQKDIDDFMMALDGSENKGNLGANAILGVSLAVAKAGAVHKGLP 160

Query: 364 LYKHLADLAGNNDIVLPVPAFNVINGGSHAGNKLAMQEFMIFPTGASTFSEAMRMGSEVY 543
           LYK++A+LAG   +VLPVPAFNVINGGSHAGNKLAMQEFMI P GAS+F+EAMRMGSEVY
Sbjct: 161 LYKYIAELAGTGKVVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFAEAMRMGSEVY 220

Query: 544 HHLKKIIKEKFGLDSTAVGDESGFAPNIQNNKDALYLIQDAIQKAGYAG 690
           HHLK  IK+++GLD+TAVGDE GFAPNIQ+NK+ L L+  AI KAGY G
Sbjct: 221 HHLKAEIKKRYGLDATAVGDEGGFAPNIQDNKEGLDLLNTAIDKAGYTG 269


>Z68318-2|CAA92692.1|  434|Caenorhabditis elegans Hypothetical
           protein T21B10.2a protein.
          Length = 434

 Score =  330 bits (812), Expect = 4e-91
 Identities = 159/229 (69%), Positives = 184/229 (80%)
 Frame = +1

Query: 4   QIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNI 183
           QI+DSRGNPTVEVDL TE G+FRAAVPSGASTGVHEALELRD  K+ + GKGVL A+ NI
Sbjct: 10  QIYDSRGNPTVEVDLFTEKGVFRAAVPSGASTGVHEALELRDGDKAVHLGKGVLKAVSNI 69

Query: 184 NELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVSLXXXXXXXXXXNVP 363
           NE IAP L     +VT Q++ID+ M+ LDG+ENK  LGANAILGVSL           +P
Sbjct: 70  NEKIAPALIAKGFDVTAQKDIDDFMMALDGSENKGNLGANAILGVSLAVAKAGAVHKGLP 129

Query: 364 LYKHLADLAGNNDIVLPVPAFNVINGGSHAGNKLAMQEFMIFPTGASTFSEAMRMGSEVY 543
           LYK++A+LAG   +VLPVPAFNVINGGSHAGNKLAMQEFMI P GAS+F+EAMRMGSEVY
Sbjct: 130 LYKYIAELAGTGKVVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFAEAMRMGSEVY 189

Query: 544 HHLKKIIKEKFGLDSTAVGDESGFAPNIQNNKDALYLIQDAIQKAGYAG 690
           HHLK  IK+++GLD+TAVGDE GFAPNIQ+NK+ L L+  AI KAGY G
Sbjct: 190 HHLKAEIKKRYGLDATAVGDEGGFAPNIQDNKEGLDLLNTAIDKAGYTG 238


>Z68318-3|CAD57704.1|  337|Caenorhabditis elegans Hypothetical
           protein T21B10.2b protein.
          Length = 337

 Score =  172 bits (418), Expect = 2e-43
 Identities = 85/134 (63%), Positives = 100/134 (74%)
 Frame = +1

Query: 4   QIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNI 183
           QI+DSRGNPTVEVDL TE G+FRAAVPSGASTGVHEALELRD  K+ + GKGVL A+ NI
Sbjct: 10  QIYDSRGNPTVEVDLFTEKGVFRAAVPSGASTGVHEALELRDGDKAVHLGKGVLKAVSNI 69

Query: 184 NELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVSLXXXXXXXXXXNVP 363
           NE IAP L     +VT Q++ID+ M+ LDG+ENK  LGANAILGVSL           +P
Sbjct: 70  NEKIAPALIAKGFDVTAQKDIDDFMMALDGSENKGNLGANAILGVSLAVAKAGAVHKGLP 129

Query: 364 LYKHLADLAGNNDI 405
           LYK++A+LAG   I
Sbjct: 130 LYKYIAELAGTGKI 143


>U56864-1|AAB04059.1|  355|Caenorhabditis elegans EGL-30 protein.
          Length = 355

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -2

Query: 587 ESNPNFSLMIFFKWWYTSEPILMASLKVDAPVGKIMNSCMASLFPACDPP 438
           ES   F  +I + W+  S  IL  + K D    KI+ S +A  FP  D P
Sbjct: 246 ESKALFRTIITYPWFTNSSVILFLNKK-DLLEEKILYSHLADYFPEYDGP 294


>AY008139-1|AAG32092.1|  355|Caenorhabditis elegans heterotrimeric G
           protein alphasubunit protein.
          Length = 355

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -2

Query: 587 ESNPNFSLMIFFKWWYTSEPILMASLKVDAPVGKIMNSCMASLFPACDPP 438
           ES   F  +I + W+  S  IL  + K D    KI+ S +A  FP  D P
Sbjct: 246 ESKALFRTIITYPWFTNSSVILFLNKK-DLLEEKILYSHLADYFPEYDGP 294


>AF003739-2|AAM15593.1|  303|Caenorhabditis elegans Egg laying
           defective protein 30,isoform b protein.
          Length = 303

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -2

Query: 587 ESNPNFSLMIFFKWWYTSEPILMASLKVDAPVGKIMNSCMASLFPACDPP 438
           ES   F  +I + W+  S  IL  + K D    KI+ S +A  FP  D P
Sbjct: 194 ESKALFRTIITYPWFTNSSVILFLNKK-DLLEEKILYSHLADYFPEYDGP 242


>AF003739-1|AAB58071.1|  355|Caenorhabditis elegans Egg laying
           defective protein 30,isoform a protein.
          Length = 355

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -2

Query: 587 ESNPNFSLMIFFKWWYTSEPILMASLKVDAPVGKIMNSCMASLFPACDPP 438
           ES   F  +I + W+  S  IL  + K D    KI+ S +A  FP  D P
Sbjct: 246 ESKALFRTIITYPWFTNSSVILFLNKK-DLLEEKILYSHLADYFPEYDGP 294


>Z81527-14|CAB04278.2|  506|Caenorhabditis elegans Hypothetical
           protein F35E12.8 protein.
          Length = 506

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -1

Query: 96  GGTRGYSCPEQAKLCYQINFHCRVATRVKD 7
           GGT  +     A+  + IN+HC++  +++D
Sbjct: 35  GGTGTFPPDSAARFQFPINYHCKIQFKIQD 64


>Z79753-8|CAB02089.2|  506|Caenorhabditis elegans Hypothetical
           protein F35E12.8 protein.
          Length = 506

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -1

Query: 96  GGTRGYSCPEQAKLCYQINFHCRVATRVKD 7
           GGT  +     A+  + IN+HC++  +++D
Sbjct: 35  GGTGTFPPDSAARFQFPINYHCKIQFKIQD 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.314    0.134    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,012,300
Number of Sequences: 27780
Number of extensions: 327804
Number of successful extensions: 707
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)