Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0319
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   3.6  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   6.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.4  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 595 VGDESGFAPNIQNNKD 642
           +GD  GFA  I NN D
Sbjct: 203 IGDNEGFALIIYNNSD 218


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 391 QPNQPSACTAE 359
           QPN+PS CT E
Sbjct: 5   QPNRPSYCTWE 15


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 615 ETTFITNSRRVQSKLLLNDL 556
           E+TFI   RR+ S +   D+
Sbjct: 664 ESTFIPEERRIYSPITFQDV 683


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.134    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,247
Number of Sequences: 438
Number of extensions: 3837
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)