Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0319
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74030.1 68414.m08573 enolase, putative similar to Swiss-Prot...   311   3e-85
At2g36530.1 68415.m04481 enolase identical to SWISS-PROT:P25696 ...   289   2e-78
At2g29560.1 68415.m03590 enolase, putative similar to enolase [S...   235   2e-62
At3g15260.2 68416.m01928 protein phosphatase 2C, putative / PP2C...    30   1.3  
At3g15260.1 68416.m01927 protein phosphatase 2C, putative / PP2C...    30   1.3  
At1g04310.1 68414.m00422 ethylene receptor-related similar to et...    30   1.7  
At1g32340.1 68414.m03985 zinc finger (C3HC4-type RING finger) fa...    29   2.2  
At3g45940.1 68416.m04971 alpha-xylosidase, putative strong simil...    29   2.9  
At3g55110.1 68416.m06120 ABC transporter family protein ATP-bind...    29   3.8  
At1g64050.1 68414.m07255 expressed protein                             28   5.1  

>At1g74030.1 68414.m08573 enolase, putative similar to
           Swiss-Prot:P15007 enolase (EC 4.2.1.11)
           (2-phosphoglycerate dehydratase)(2-phospho-D- glycerate
           hydro-lyase) [Drosophila melanogaster]
          Length = 477

 Score =  311 bits (764), Expect = 3e-85
 Identities = 152/229 (66%), Positives = 182/229 (79%)
 Frame = +1

Query: 4   QIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNI 183
           QI DSRGNPTVEVDL+T+  L+R+AVPSGASTG++EALELRD  KS Y GKGVL AIKNI
Sbjct: 58  QIIDSRGNPTVEVDLITD-DLYRSAVPSGASTGIYEALELRDGDKSVYGGKGVLQAIKNI 116

Query: 184 NELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVSLXXXXXXXXXXNVP 363
           NEL+AP+L    ++V  Q ++D LML+LDGT NKSKLGANAILGVSL           VP
Sbjct: 117 NELVAPKLI--GVDVRNQADVDALMLELDGTPNKSKLGANAILGVSLSVCRAGAGAKGVP 174

Query: 364 LYKHLADLAGNNDIVLPVPAFNVINGGSHAGNKLAMQEFMIFPTGASTFSEAMRMGSEVY 543
           LYKH+ + +G  ++V+PVPAFNVINGGSHAGN LAMQEFMI P GA++FSEA +MGSEVY
Sbjct: 175 LYKHIQETSGTKELVMPVPAFNVINGGSHAGNSLAMQEFMILPVGATSFSEAFQMGSEVY 234

Query: 544 HHLKKIIKEKFGLDSTAVGDESGFAPNIQNNKDALYLIQDAIQKAGYAG 690
           H LK IIK K+G D+  VGDE GFAPN+Q+N++ L L+ DAI+KAGY G
Sbjct: 235 HTLKGIIKTKYGQDACNVGDEGGFAPNVQDNREGLVLLIDAIEKAGYTG 283


>At2g36530.1 68415.m04481 enolase identical to SWISS-PROT:P25696
           enolase (EC 4.2.1.11) (2-phosphoglycerate
           dehydratase)(2-phospho-D- glycerate hydro-lyase)
           [Arabidopsis thaliana]
          Length = 444

 Score =  289 bits (708), Expect = 2e-78
 Identities = 150/236 (63%), Positives = 176/236 (74%), Gaps = 7/236 (2%)
 Frame = +1

Query: 4   QIFDSRGNPTVEVDLVTELGL-FRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKN 180
           QIFDSRGNPTVEVD+ T  G+   AAVPSGASTG++EALELRD   S+Y GKGV  A+ N
Sbjct: 11  QIFDSRGNPTVEVDIHTSNGIKVTAAVPSGASTGIYEALELRDG-GSDYLGKGVSKAVGN 69

Query: 181 INELIAPELTKANLEVTQQREIDELML-KLDGTEN-----KSKLGANAILGVSLXXXXXX 342
           +N +I P L     + TQQ  ID  M+ +LDGT+N     K KLGANAIL VSL      
Sbjct: 70  VNNIIGPALI--GKDPTQQTAIDNFMVHELDGTQNEWGWCKQKLGANAILAVSLAVCKAG 127

Query: 343 XXXXNVPLYKHLADLAGNNDIVLPVPAFNVINGGSHAGNKLAMQEFMIFPTGASTFSEAM 522
                +PLYKH+A+LAGN  IVLPVPAFNVINGGSHAGNKLAMQEFMI P GA++F EAM
Sbjct: 128 AVVSGIPLYKHIANLAGNPKIVLPVPAFNVINGGSHAGNKLAMQEFMILPVGAASFKEAM 187

Query: 523 RMGSEVYHHLKKIIKEKFGLDSTAVGDESGFAPNIQNNKDALYLIQDAIQKAGYAG 690
           +MG EVYHHLK +IK+K+G D+T VGDE GFAPNIQ NK+ L L++ AI+KAGY G
Sbjct: 188 KMGVEVYHHLKSVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIEKAGYTG 243


>At2g29560.1 68415.m03590 enolase, putative similar to enolase
           [Spinacia oleracea] gi|8919731|emb|CAB96173
          Length = 475

 Score =  235 bits (576), Expect = 2e-62
 Identities = 120/227 (52%), Positives = 153/227 (67%)
 Frame = +1

Query: 4   QIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNI 183
           QI DSRG PTVEVDL T  G+FRA+VPSG S+G +EA+ELRD  K  Y G  V  A+KNI
Sbjct: 54  QILDSRGIPTVEVDLHTNKGVFRASVPSGDSSGTYEAIELRDGDKGMYLGNSVAKAVKNI 113

Query: 184 NELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVSLXXXXXXXXXXNVP 363
           NE I+  L    ++   Q +ID+ M+ LD TE KS+LGANAIL VS+           VP
Sbjct: 114 NEKISEALI--GMDPKLQGQIDQAMIDLDKTEKKSELGANAILAVSIAACKAGAAEKEVP 171

Query: 364 LYKHLADLAGNNDIVLPVPAFNVINGGSHAGNKLAMQEFMIFPTGASTFSEAMRMGSEVY 543
           L KHL+DL+G  ++VLPVPAF V++GG HA N  A+QE MI P GAS F EA++ GSE Y
Sbjct: 172 LCKHLSDLSGRANMVLPVPAFTVLSGGKHASNTFAIQEIMILPIGASRFEEALQWGSETY 231

Query: 544 HHLKKIIKEKFGLDSTAVGDESGFAPNIQNNKDALYLIQDAIQKAGY 684
           HHLK +I EK G     VG++ G AP+I + K+ L L+++AI + GY
Sbjct: 232 HHLKAVISEKNGGLGCNVGEDGGLAPDISSLKEGLELVKEAINRTGY 278


>At3g15260.2 68416.m01928 protein phosphatase 2C, putative / PP2C,
           putative similar to protein phosphatase type 2C
           GB:AAD17805 from [Lotus japonicus]
          Length = 289

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 529 GSEVYHHLKKIIKEKFGLDSTAVGDESG 612
           G E+ H +K+ +KEK GL ++A   +SG
Sbjct: 3   GREILHKMKESVKEKVGLGASASSADSG 30


>At3g15260.1 68416.m01927 protein phosphatase 2C, putative / PP2C,
           putative similar to protein phosphatase type 2C
           GB:AAD17805 from [Lotus japonicus]
          Length = 289

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 529 GSEVYHHLKKIIKEKFGLDSTAVGDESG 612
           G E+ H +K+ +KEK GL ++A   +SG
Sbjct: 3   GREILHKMKESVKEKVGLGASASSADSG 30


>At1g04310.1 68414.m00422 ethylene receptor-related similar to
           ethylene receptor CS-ETR2 [Cucumis sativus] GI:6136818;
           contains Pfam profiles PF01590: GAF domain, PF00512: His
           Kinase A (phosphoacceptor) domain
          Length = 645

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +1

Query: 478 FMIFP-TGASTFSEAMRMGSEVYHHL--KKIIKEKFGLDSTAVGDESGFAPNIQN 633
           F +FP +G S  SE   +   V+ H   K+ ++ +FG + TA G+ES  + +  N
Sbjct: 520 FWVFPESGNSDVSERKDIQEAVWRHCYSKEYMEVRFGFEVTAEGEESSSSSSGSN 574


>At1g32340.1 68414.m03985 zinc finger (C3HC4-type RING finger)
           family protein contains a Zinc finger, C3HC4 type (RING
           finger) signature, PROSITE:PS00518
          Length = 688

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
 Frame = +1

Query: 109 EALELRDNIKSEYHGKG--VLTAIKNINELIA-PELTKANLEVTQQREIDELM 258
           E+ E+ D +  EY  K   +LT +K++   ++ PELT+  L++  Q + DEL+
Sbjct: 143 ESEEIADGV-DEYETKEDIMLTILKDLRSSVSEPELTEEQLKMNDQLQEDELL 194


>At3g45940.1 68416.m04971 alpha-xylosidase, putative strong
           similarity to alpha-xylosidase precursor GI:4163997 from
           [Arabidopsis thaliana]
          Length = 868

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +1

Query: 409 LPVPAFNVINGGSHAGNKLAMQEFMIFPTGAS 504
           LP P FNV+N   +    L MQ+ + FP GAS
Sbjct: 690 LPAP-FNVVNVHLYQNAILPMQQVVAFPAGAS 720


>At3g55110.1 68416.m06120 ABC transporter family protein ATP-binding
           cassette-sub-family G-member 2, Mus musculus,
           EMBL:AF140218
          Length = 708

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/71 (22%), Positives = 30/71 (42%)
 Frame = +1

Query: 10  FDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINE 189
           F S G P  E + +TE  L       G+S G  + +E  +  +     +    +  ++ E
Sbjct: 308 FSSFGRPIPEKENITEFALDVIRELEGSSEGTRDLVEFNEKWQQNQTARATTQSRVSLKE 367

Query: 190 LIAPELTKANL 222
            IA  +++  L
Sbjct: 368 AIAASVSRGKL 378


>At1g64050.1 68414.m07255 expressed protein
          Length = 668

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 104 TPVEAPEGTAARNKPSSVTRSTSTVGLPRESKI 6
           +P+ +PE   +  K   ++RS+S  G PR +K+
Sbjct: 107 SPIASPESAESPRKRGKLSRSSSGNGTPRRTKL 139


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.134    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,296,911
Number of Sequences: 28952
Number of extensions: 308614
Number of successful extensions: 566
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)