Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0318
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    29   0.90 
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    27   2.8  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   3.6  
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    27   3.6  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    27   3.6  
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    26   4.8  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    26   6.4  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    26   6.4  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    25   8.4  

>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 333 EKDLKLVSQSKLNTQNTLIINYDPETSEEL 422
           EK ++L+SQ  +   N L  NY P+ +EEL
Sbjct: 213 EKSVQLISQELVAKGNQLFNNYGPKGNEEL 242


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 17/74 (22%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
 Frame = +3

Query: 186  ECFHQILGDLQTVADFKLMYLCWECTGRLSNYIKFKSQVRYAHKCL-QDIEKDLKLVSQ- 359
            E  ++++ DLQ     K +    E  G  SNY+   + +  ++K L +++E++ +++++ 
Sbjct: 1197 ESSNRVIADLQRGITEKDVSSTSESVGERSNYLNMVALLNESNKSLRENLERNEEVITEL 1256

Query: 360  -SKLNTQNTLIINY 398
              K+ T  T + N+
Sbjct: 1257 REKIETLKTDLANF 1270


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 360 SKLNTQNTLIINYDPETSEELDWHIAASEEKETLS 464
           + LN ++ LII    + + EL+W I+A+  K  +S
Sbjct: 37  NSLNQEDALIIEKAIKRAFELEWQISANHGKRQIS 71


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +2

Query: 452 GNTLRSAMFRNRNSSATKKEDKESFEEQE 538
           G+TL+S++   R+S  +KK  +E FEE E
Sbjct: 360 GDTLKSSI---RSSPKSKKRSREDFEENE 385


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 627 NALFKCEKCVEAFPNKEDLNDHNLKKH 707
           NA F+C+KC   F  +  L +H    H
Sbjct: 136 NATFRCDKCDMMFVKQSGLTNHKRTYH 162


>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 533 ALRSFLYLLFWLHYCFCF*TLLIGECF 453
           ALR    +L++L Y F F +LL+G  F
Sbjct: 158 ALRKIPNILYFLGYVFFFPSLLVGPAF 184


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 357 QSKLNTQNTLIINYDPETSEELD 425
           + + + +N LII  DPET+ +LD
Sbjct: 439 KKRRDLRNELIITIDPETARDLD 461


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 19/96 (19%), Positives = 43/96 (44%)
 Frame = +3

Query: 333 EKDLKLVSQSKLNTQNTLIINYDPETSEELDWHIAASEEKETLSDQQCSETETVVQPXXX 512
           E + +++ +++   +++   +   E+ EE +  +   E+KE+ SD     + +  +    
Sbjct: 121 ESEEEVIVKTEEKKESSSESSSSSESEEEEEAVVKIEEKKESSSDSSSESSSSESESESS 180

Query: 513 XXXXXXXXRLMHLYKEIELTESDIEAERDTEASSDS 620
                    ++   K  E  E   E+  D+E+SSDS
Sbjct: 181 SSESEEEEEVVE--KTEEKKEGSSESSSDSESSSDS 214


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/41 (24%), Positives = 17/41 (41%)
 Frame = +3

Query: 570 TESDIEAERDTEASSDSFVNALFKCEKCVEAFPNKEDLNDH 692
           T   I       +S+ S  N  ++C +C++ F     L  H
Sbjct: 446 TSRKIAQSHTGSSSTSSAANVRYRCTECLQGFSRPSSLKIH 486


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,634,728
Number of Sequences: 5004
Number of extensions: 47726
Number of successful extensions: 158
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)